Hordeum vulgare subsp. vulgare (domesticated barley): 123447760
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Entry
123447760 CDS
T11213
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123447760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123447760
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123447760
Spliceosome [BR:
hvg03041
]
Complex C
Other components
Step II factors
123447760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND_NTPase5
ATPase_2
ABC_tran
SLFN-g3_helicase
NAT10_TcmA_helicase
NPHP3_N
AAA_16
T2SSE
Dynamin_N
nSTAND6
nSTAND3
Flavi_DEAD
AAA_18
SRP54
Cas3-like_C_2
NB-ARC
TRIM_CC
AAA_33
FtsK_SpoIIIE
AAA_29
Motif
Other DBs
NCBI-GeneID:
123447760
NCBI-ProteinID:
XP_044980348
UniProt:
A0A8I6XFN5
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All DBs
Position
4H:37245527..37259030
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AA seq
707 aa
AA seq
DB search
MPSTSPSPSGPPVLPISEHEDEIVAAVEANPVIVVIGETGSGKSTQLSQILHRRGYTRRG
AIAVTQPRRVAAVSVSRRVAQELGVSIGEEVGYAIRFEDRTSEKTKIKYLTDGVLLRESL
SNPELKQYSVIILDEAHERSLNTDILLGLMKRLIKHRASDLKVLITSATLDGLKVSNFFS
GCPVLNIPGAIFPVEKFYSTDRPTNYIESSLRTAIDIHVKEAPGDVLIFMTGKDDIDKMV
SKLEERIQNLEEGSCMDALVLPLHGSLPPEQQVRVFSPAPPNCRRFIVATNVAETSLTVD
GVVFVVDCGYVKQRQYNPSTGMYSLDVVEISRVQADQRAGRAGRTRPGKCYRLYPSSIYQ
KEFLEATVPEIQRTSLAGSVLYLKSLNLPDIDILKFDFLDPPSRESLEDALRQLYLIDAI
DESGQITDVGRLMAELPLDPSLSRTLIEANELGCLSQALTVAAVLSAEITLRQTRSKDME
GKRKRQELPDGSGWGDHVQLLQIFESWDQADYDPRWCSDHDLQVRGMKFSKDVRNQLSQI
IQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGNQLAERMIHHNGYHTVGYRTQLVQV
HPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCGVEQTWVKPILKKLEKLNINKLSGG
SSALTDSESLEEKQPGSPTKAAAAKQSDVDSKIQAARERYLARKGKK
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgacgtcgccgtcgccgtcggggccgccggtgctgccaatctcggagcacgag
gacgaaatcgtggctgccgtggaggcgaacccggtgatcgtggtcatcggcgagaccggc
tccggcaagagcacccagctctcccagatcctccaccgtcgaggctacacccgccgcggt
gctattgcggtcacccagccccgccgtgtcgcggccgtatcagtctccaggagggtggca
caagagctcggtgtctcaattggggaagaagttggctatgctattcggtttgaagaccga
acttcagaaaagactaagatcaagtacctaacagatggtgttcttctgcgggaaagcctt
tcaaaccccgagttgaagcaatactcagtaattatcttggacgaagctcatgaacgtagc
ttgaacaccgatatccttttaggtttaatgaaaagattgatcaaacatcgagcttcagat
ttgaaagttctcatcacttcggcgactcttgatggtttgaaagtgtcaaatttcttctca
ggatgtcctgtgttgaacatccctggagctatattccccgtggagaagttttacagcaca
gaccgtccaacaaattatatcgaatcctctctcagaacagctatagatatccatgttaag
gaagctcctggggatgtattaatatttatgacaggaaaggatgacatcgacaagatggtg
tcaaaattggaggaaagaattcaaaatctcgaggaaggttcttgtatggatgctcttgtt
ctcccactccatggttctttgccacctgaacagcaggttcgggtgttctctccagcacct
ccaaattgtcgacggttcattgttgcaacaaatgtagctgaaacttcgttaactgtggat
ggtgttgtgtttgtggttgattgtggttatgtaaagcaacgccagtataatccgtcaact
ggaatgtattcacttgatgtagttgagattagcagagtacaagctgaccagcgagctggg
cgagctggaagaactcggcctggcaagtgttatagattatacccaagttccatctaccaa
aaggagtttctcgaggctacagttccagaaattcaacgaacttcccttgctggaagtgtt
ctgtatctgaaatctttaaatcttcctgatattgacattctaaagtttgatttcctcgac
ccaccatcacgtgaatcattagaagatgcgttgaggcagttataccttattgatgcaatt
gatgaaagtgggcaaataacagatgttgggcgccttatggcagagctccctcttgaccct
tcgctttcaaggactttgattgaagctaatgaactgggatgtctgtctcaggcattaact
gttgctgcagtcttgtctgctgaaatcacactgcggcaaactagaagcaaggacatggag
ggaaagagaaaacggcaagagctacctgatggttctggctggggtgaccatgtacaattg
cttcaaatatttgaaagctgggatcaagcagactatgatccaagatggtgctcagatcat
gatttacaggtgcggggcatgaaattcagcaaagatgtgagaaatcaattaagtcaaatt
attcaaaaaattgctaaaggtccaacagatttgcaagcaaggagaggacggaagagtgac
cctgactacagaaaattgagaagagcactttgtgtaggatatggcaaccagttagcggag
aggatgattcatcataatggttaccatacggttggctacaggacacaacttgtgcaggtg
catccatcttctgtactggaaggtgatgaatacgggaaactgcctgtgtatgtcgtctac
cacgagctaataaatactacccgccctttcatgagaaatgtttgtggggttgagcagact
tgggttaaaccaatcttgaagaagcttgagaaactgaacataaacaaattaagcggcggt
tcaagtgcgttgacagattccgaatctctagaggagaagcaaccagggtcgccaacaaaa
gctgcggctgctaagcaatctgatgtggatagtaaaatccaggcggcccgagagcgctac
cttgcacgaaaaggcaagaagtga
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