Hordeum vulgare subsp. vulgare (domesticated barley): 123448052
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Entry
123448052 CDS
T11213
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123448052
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hvg01002
]
123448052
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hvg04121
]
123448052
03036 Chromosome and associated proteins [BR:
hvg03036
]
123448052
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123448052
Peptidases and inhibitors [BR:
hvg01002
]
Metallo peptidases
Family M67
123448052
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123448052
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
123448052
BRISC complex
123448052
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
123448052
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
123448052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
123448052
NCBI-ProteinID:
XP_044980759
UniProt:
A0A8I6X8W1
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All DBs
Position
1H:complement(485161573..485167581)
Genome browser
AA seq
427 aa
AA seq
DB search
MSLTEVRLGEEVWLTCLSHALTTETEEVMGLLLGDVESSSRGGSTAVIWGALPQMRCERK
KDRVEVNPALLADASKEAEKMTATIGKTTRVIGWYHSHPHITVLPSHVDVRTQAMFQLLD
PGFVGLIFSCFSEDAQKVGKIQVIAFQSLDGTHNTQRAIVPVITNPVIDLESSWSSSDNS
LALIEGIEHDTGDSRASNGSKVWGRSQDVDLYPLDTNPSARHLPIDSAIVPYEPDNSAGP
SVDQDGSDLSPSIQEALHRSTMDISGAEYRRKEVPLKVFPTRHLLKLDTTLSSYCGMQHV
LFKEEQSAYNQAMLQNICDGKMHPLTSMHHTSTYNASLCKLMEYCLSPAIGVLQDRVKEN
ELRLAMLLEEAKQLEAEKQGTKTVSPRRAMPGGTTSGIISPRGQDKYASGRQGGPVSPSS
SSRRKAP
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacgcc
ctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgacgtcgagtcctccagc
aggggcggctccaccgcggtgatatggggcgcgttgccgcagatgaggtgcgagcggaag
aaggaccgcgtcgaggtcaaccccgcgctgctcgccgacgcgtccaaggaggccgagaaa
atgacggccactattgggaagacgacccgggtgatcggctggtaccactcgcacccgcat
atcactgtcctgccttcccatgtagatgtgcgaacccaggctatgtttcagttgctagat
ccaggttttgttggattgatattttcctgttttagtgaagatgctcaaaaggttgggaaa
atccaagtgattgccttccagtctcttgatggaacacataacacacaacgtgctattgtt
cctgttattaccaatccagtcattgaccttgaatcatcttggagttcatcagataactca
ttagcattaattgagggcattgaacatgacactggggattctagagcttcaaacggaagc
aaggtctggggaagatctcaggatgtggatctgtatcctttggacacaaatccttcggca
agacatctaccaatagacagcgctattgttccttatgaaccggataacagtgctggaccc
tctgttgatcaagatggttcagatctgtccccaagcatacaggaggctttgcaccgctca
actatggacataagtggtgcagagtatagaaggaaggaggtgccacttaaagtattccct
acaaggcatctgctaaagctggacactacgttgagttcttactgtggcatgcaacatgtc
ctttttaaagaggaacaatcagcatataaccaagccatgcttcagaacatttgtgatggg
aagatgcacccacttacatctatgcaccatacctccacatacaatgcttctctatgcaaa
ctgatggaatactgcttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaat
gaacttcggttggctatgctattggaggaggctaaacaactggaggccgagaagcagggc
acgaaaaccgtttctcctcgccgtgcgatgcccggagggactactagtggcatcatttcg
ccaaggggccaggacaagtacgcttccggcagacaaggggggcctgtaagccctagcagc
agcagccggaggaaggctccttga
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