Hordeum vulgare subsp. vulgare (domesticated barley): 123448119
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Entry
123448119 CDS
T11213
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
hvg03015
mRNA surveillance pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123448119
09122 Translation
03013 Nucleocytoplasmic transport
123448119
03015 mRNA surveillance pathway
123448119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123448119
03041 Spliceosome [BR:
hvg03041
]
123448119
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123448119
TREX complex
123448119
Spliceosome [BR:
hvg03041
]
Complex C
Other components
EJC/TREX
123448119
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123448119
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
RRM_11
Motif
Other DBs
NCBI-GeneID:
123448119
NCBI-ProteinID:
XP_044980829
UniProt:
F2DKK1
A0A8I6XNG1
LinkDB
All DBs
Position
4H:128693908..128696062
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AA seq
260 aa
AA seq
DB search
MADTLDMSLDDIITKNKPHHRRGRHNPASAASGGSARPRRRFRSRAATRAVAAPYHQLSL
QQQVPPAFGYVAQSMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSIN
YDKSGRSKGTAEVVFSARSSAVAALKKYNNVHLDGKPMKIEVIGTNIEAPAPIPAIFALA
PPPGNFSFPSKSGPAMGVGGRGWSRGGGGFSARSGGGFGGRGRVRSDHGRGKGGRGNLEI
SAADLDADLDKYHSAAMEIS
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaccctcgacatgtcgctcgacgacatcatcaccaagaacaagccccaccac
cgccgtggccgccacaacccagcgtccgccgcctcgggtggatccgcgcgcccacgccgc
cgcttccgcagccgcgccgccacccgcgccgtcgccgcgccctaccaccaactcagcctc
cagcaacaggtgccgccagcttttgggtatgttgcccagtcgatggccatggtaacggcg
ccgtctgccttggactcgcccaccaagctctacatctccaacctcgactacaacgtctcc
aacgaggatatcaaggaactgttttctgagatgggtgatatccagcgctactccattaac
tatgacaagagtggaagatcaaagggaactgcagaggttgtgttttcggcaagatcgtct
gctgtagctgctcttaagaagtacaacaacgtgcatcttgatggcaaacctatgaaaatt
gaagtcattgggacaaacattgaggcacctgcacccatacctgctatttttgctttggct
ccaccgcctggaaacttcagttttccttccaaaagtggacctgcaatgggtgttggcggt
cgaggatggtctcgtggcggaggtgggttcagtgctcgcagcggaggtgggttcggtggt
cgtggccgagtccgtagcgaccatgggcgagggaagggagggcggggcaacctggaaatt
tctgctgcagatctcgacgccgacttggacaagtaccactcggctgcaatggagatcagc
taa
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