Hordeum vulgare subsp. vulgare (domesticated barley): 123448425
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Entry
123448425 CDS
T11213
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123448425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123448425
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123448425
Spliceosome [BR:
hvg03041
]
Complex C
Other components
Step II factors
123448425
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
AAA_16
Sigma54_activ_2
TsaE
Flavi_DEAD
nSTAND_NTPase5
PhoH
SLFN-g3_helicase
ABC_tran
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
123448425
NCBI-ProteinID:
XP_044981231
UniProt:
A0A8I6XHL5
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All DBs
Position
4H:complement(224420068..224425047)
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AA seq
1242 aa
AA seq
DB search
MAPASAEGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDA
KLKANGADLPDYFIRTLLTIIHAILPPPSHIPSSAASQSNSKYRALSRPDDADRARELRL
ELERDANAPAATTPAPSTDRSRDDRGRDRDHDRRRDERGRDRDHDRSRDRDSGRGDRSQN
RDRAHDDRGQDRNHDRGRERDHGLDRDRDRGTAYGRDRDREGDRDGNGRKDLDRLKQRDR
YVDRDTGNAHGRTRRYLDEEEGQQERAGGRKKENTLTNSSGEPELYQVYRGRVTRVMDTG
CFVKLEDVRGGSEGLVHVSQMASRRVANAKEVVKRDQEVFVKVVSVKGDKLSLSLRDVDQ
DTGKDLLPMQRGVEDAPRTNPSVGSGGTAGSGRRLGLSGIVITEEDEVAPISRRPLKRMS
SPERWEAKQLIASGVLDVRNYPQFDEDGDGMLYQEEGAEEELEIELNEDEPEFLQGQSRF
SIDMSPVKIFKNPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPD
TGERHLAQELRGVGLSAYDMPEWKKEAYGKALTFGQRSKLSIQDQRQTLPIYKLKKELIQ
AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVAEEFGC
RLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDV
LFGLLKQLVKRRPDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDY
LDAALITVLQIHLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKDVPELIILPVYSAL
PSEMQSKIFEPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKINVYNSKQGLDSLVI
TPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMG
INDLLSFDFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLAS
VDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKN
FSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVAAGKNFTKVRKAITAGFFFHAA
RKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVEL
APRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgtcggcggagggtcccggcgacgacgggctccgaaagttggagtaccta
tcgctcgtctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggta
ctggctgagttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgcc
aagctcaaggccaacggcgctgacctccccgactacttcatccgcacgctcctcaccatc
atccacgccatcctcccgccgccctcccatatccctagctctgccgcctcgcagtccaac
tccaagtaccgcgcgctctcccgccccgacgacgcagatcgtgcccgcgagctccgcctc
gagcttgagcgtgatgcgaatgccccagcggcgaccacccctgccccctccacggaccgc
agtcgcgacgaccgcggacgggatcgtgaccatgaccgcaggcgtgatgaacgcggacgg
gatcgtgaccatgaccgcagtcgtgacagagacagcgggcgtggtgaccgcagccagaac
cgtgaccgtgcacatgatgaccgtggccaggatcgtaaccatgaccgaggccgtgaacgt
gatcatggcttggacagggatcgggaccgtggtactgcctatggacgcgacagagaccgg
gagggagatcgggatggtaatggtcggaaggacctggaccgcctcaagcaaagggataga
tatgtggacagggatacaggcaatgcccatggaaggaccaggaggtatctggatgaggag
gagggacagcaggaaagggctggaggaaggaagaaggagaataccttgacaaattcaagc
ggagagccagagctttaccaagtgtaccgggggagggtgacccgtgtaatggacactggt
tgcttcgtgaagcttgaggatgttcgtggtggcagtgaggggcttgttcatgtatcacag
atggcaagcagacgggtagccaatgcaaaggaggtggtgaagcgtgatcaggaggtgttc
gtgaaggtggtttcggtgaagggagataagttgagcctctcactgagggatgtggatcag
gatacaggaaaggaccttttgccgatgcagcgtggcgtggaggatgcaccaaggactaac
ccatctgttggtagtggtggtactgctgggtctggaaggaggttgggtctatcagggatt
gtgattacagaggaggatgaggttgcacccatctcacggcgtcccctcaagcggatgagc
tcaccggagaggtgggaggcgaagcagctaattgcttcgggtgttctcgatgtgaggaat
tacccacagtttgatgaggatggtgatggaatgttgtatcaggaggaaggcgcagaggag
gagttggagattgagcttaatgaggatgaaccagagttcttgcagggacagagcagattc
tcaattgacatgtcacctgttaagattttcaagaatccagagggttcattaagtcgagca
gcagctctccagacagccctcatcaaggagcgccgcgaggttagagaacaagagcagaga
gcaatgctggattcgatacccaaggatctgaataggccatgggaggatccaatgcccgac
acaggtgagcgacaccttgcacaggagcttagaggtgttgggctatcagcttatgacatg
ccagaatggaagaaggaagcatatggaaaagctttaacgtttgggcaaaggtcaaagctt
tcaatacaagatcagaggcaaactcttccaatatacaagttgaagaaagagctaattcaa
gctgtgcatgataatcaagttttagttgttatcggagaaactggctctggaaaaacaaca
caggtgacacaatatttggctgaagccggttatacctcaaggggtaaaattggttgtact
caacctcgtagggtggctgcaatgtctgttgcgaagagagtggcagaagaatttggctgt
cgactgggagaggaagttggttatgccattcgctttgaggattgcactggcccagaaact
gtgataaaatacatgaccgatggaatgcttctgcgtgaaattttagttgatgagaacctt
tcccagtattcagtagtcatgcttgatgaagcacatgaaaggaccatccatacagatgtt
ctctttggtttgctgaagcagcttgttaagcgtagacctgacatgagacttattgttact
tctgctacccttgatgctgaaaagttctctgggtatttcttcaactgcaacatcttcaca
attccgggaaggacattcccagtggagatactctacaccaaacaaccagaaagtgactac
ttggatgctgcattgattaccgtgctgcagatccacttgacagagccagagggtgatatc
ctcgttttcttaaccggtcaagaggaaattgatcatgcctgtcaatgtttatatgagagg
atgaaagggctgggaaaggatgttcctgagctcataattttgcctgtgtatagtgctctg
cctagtgaaatgcagtcaaagatctttgagccagctccacctgggaagaggaaggtggtc
gtagccaccaatattgctgaagcttctttaaccattgatggcatatattatgtcatcgac
cctggtttcgccaaaatcaatgtttataattcaaaacaagggcttgattcattggtcatc
actccaatctcacaagcatcggcaaagcaaagagcagggcgtgctggccgtactggacca
ggcaaatgttatcgtctatacacggaaagtgcataccgcaatgaaatgtctccaacgacg
attccagaaattcaaaggatcaatttgggatctacagttcttaatatgaaggcaatgggg
ataaatgacctactatcctttgattttatggaccccccagcaccccaagcacttatctcc
gctatggaacagctttacagccttggcgctcttgatgaggagggccttcttaccaaactg
ggaagaaaaatggctgaatttccattggatccaccactttcaaagatgctactagctagc
gtcgaccttggatgcagtgatgagatactgactattatagcgatgattcaaacggggaat
attttctataggcctagggaaaaacaggctcaagctgatcagaaaagggccaaatttttc
cagccagagggagatcatcttactctacttgcagtatatgaggcttggaaggcaaaaaac
ttttcagggccctggtgctttgagaactttgttcagtcaagatcgttaaggagagcacag
gatgtcagaaagcagcttctaactatcatggacagatataagttggatgttgtggctgct
gggaagaacttcacgaaagtcaggaaagcaatcactgccggcttctttttccatgctgcc
aggaaggatccccaggaaggatacagaaccttggtggagaaccagccagtgtacattcac
ccaagcagtgcgctgttccagcgccaaccagattgggtcatttaccatgagcttgtaatg
acgaccaaggagtatatgagggaggtgaccgtggttgacccgaaatggttagtggagcta
gcgccaagattctacaagggcgcagatccaaccaagatgagcaagaggaagcgacaggaa
agaatcgagcctctgtacgacaggtaccatgagcccaactcatggcgtctcagcaagcgc
cgagcttga
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