KEGG   Hordeum vulgare subsp. vulgare (domesticated barley): 123448446
Entry
123448446         CDS       T11213                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123448446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hvg03041]
    123448446
Spliceosome [BR:hvg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    123448446
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_Aladin ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th PRP4 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_EIPR1 eIF2A Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_SCAP Beta-prop_NWD2_C DUF7899 Tricorn_2nd WD40_like Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 123448446
NCBI-ProteinID: XP_044981275
UniProt: F2DGM0
LinkDB
Position
4H:complement(236897868..236901903)
AA seq 504 aa
MSMENPRPLPPPMAPLPVHPPIAPIPIPVPPSTSAAADDDEAGYEVSDDHRAARERHERA
VQELLQRRRAYAMAVPTNDSAVRTRLRRLSEPITLFGEREMERRDRLRALMVRLEADAQF
DRLLRAQEDEQGAPDDDDTEQIQYPFFTEGTNQLLQARLDIAMYSLPRAKARVDRAKRRL
ADPDEDPEAEAGLVVKQAGDFVLECSEVGDDRPLTGCSFSGDASMLATSSWSGIIKVWSM
PQITKIATLKGHRERATDVAFSPVDNCLATASADKTAKLWNSDGSLLMSFDGHLDRLARV
AFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSFHPDGSLAASCGLDANA
RVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRQMLYSIPAHK
SLISYVKFEPQEGYYLATSSYDTKAALWSTRDCKAIKSLAGHESKVTSLDISGDGQQIVT
VSHDRTIKIWSCRGSARDNEMKLD
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtccatggagaaccccaggcccctcccccctcccatggctcccctccccgtccaccca
cccatcgcccccatccccatccccgtcccaccctccacatccgccgctgccgacgatgac
gaggccggctacgaggtctccgacgaccaccgcgccgcgcgggagcgccacgagcgcgcc
gtacaggagctcctgcagcgccgacgcgcctacgccatggccgtgcccaccaacgactcc
gccgtgcgcacgcgcctccgccgtctcagcgagcccatcacgctcttcggcgagcgcgag
atggagcgccgtgaccgcctacgcgcactcatggtccgcctcgaggcggacgcccagttc
gaccgcctcctccgcgcgcaggaggacgagcaaggagccccggacgacgacgacacggag
cagatccagtaccccttcttcaccgagggtaccaaccaactgctccaggcgcgccttgac
atagctatgtactcactgccccgcgctaaggccagagtcgacagggccaagcgccgcctc
gctgatcccgatgaggaccccgaggcagaggcgggccttgttgtcaagcaggcgggggac
ttcgtgcttgagtgcagcgaggttggagatgaccgcccgctcaccggctgctccttctct
ggcgatgcctcaatgctcgccacaagttcatggagtgggatcatcaaagtatggagcatg
ccacagataactaaaattgcaaccctgaaaggacatagagaacgtgcaactgatgttgcc
ttctctccagttgataactgcttagcgacagcctcagctgataaaactgccaaattatgg
aacagcgatgggtcactcctaatgtcttttgatggtcacctggatcgtcttgctcgcgtt
gcttttcatccatctggaaagtaccttggtacagctagctttgacaagacctggagattg
tgggacatcaatactggaactgaacttctactccaagagggacatagcagaagtgtatat
ggtgttagctttcatccagatggttctttagctgcatcttgtgggcttgatgcgaatgct
cgagtttgggatctaaggtcaggaagattgtactgtaccctcattgggcatgtgaaacct
gtcctaggagtcagcttctcccctaatggtcatctagttgcaactgcaagtgaagacaat
ttctgtcgaatatgggatttgaggaccagacaaatgttgtattctataccggcgcataag
agtcttatctcgtatgtgaaatttgaaccccaggagggttattatttagcgacatcttcc
tatgacactaaagcagcgctatggtcaactcgtgattgcaaagcaattaaaagcttggca
ggccatgagtcaaaggttactagtctggatattagtggagacggacaacagattgtgact
gtttcccatgatagaactataaagatctggtcatgcagaggcagcgcacgggataatgag
atgaagttggattaa

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