Hordeum vulgare subsp. vulgare (domesticated barley): 123448495
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Entry
123448495 CDS
T11213
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
hvg03015
mRNA surveillance pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123448495
09122 Translation
03013 Nucleocytoplasmic transport
123448495
03015 mRNA surveillance pathway
123448495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123448495
03041 Spliceosome [BR:
hvg03041
]
123448495
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123448495
Spliceosome [BR:
hvg03041
]
Complex C
Other components
EJC/TREX
123448495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
123448495
NCBI-ProteinID:
XP_044981343
UniProt:
F2E093
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Position
4H:260956646..260961038
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AA seq
740 aa
AA seq
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MSSFPVLKNRPIDQWKVTELKDELRKRKLPVKGLKEELVRRLFESIESEEASDESAEDVG
ANEGAPIGKDAKDVGANEPADQAPEEHTVSQKTTVSVTEICQESMVHASQETAVPLPEVS
QEIMASSVEQSPGDNVVANRESLSTEAPAEQGDQPESVAGEISTVQAGHQHAESMNMHIE
ETPEVVANGTAVVADVTSADLKSDLISSEAKSDTAEASKTDKQDTLPKPVDAQIPDADPM
DTDVAAASMNNDGKRFVTKNDLGDNTSIDNEVYSSELMNEDHKPIVSKSNNQVPEVSPDL
GSPVKCESISSDDISNNKKNIKDNMNANNFDLELEVKPEMVKPSSGITSLGGELQPLDDD
KELVKNQFSFEDIDSTANVDEVGSPEKLNLDRSSGDESLEDDVMEIKQLDFSVKSDDLRG
KTEPNSSEHVKEVSLPDSVVKGSSVDTKEVIAEEKPSASTEKRKLQAQETVANTEPIKRQ
RRWAADSGNVPERQPLIQSGFDAPNDILQPALKRSLGRADSTASGDSPKERIVPPSQKPA
TTSLRIDRFVRPFTLRAVQELLGKTGSVCSFWMDHIKTHCYVTFSSVEEATATRDAVYNL
QWPPNNGNYLLAEFVDPQEVKLKLEPPAPAATAAAVPISPATTPREAPFQQGQANQSVPC
QAAATPREQLPPPAPLVKPPTSDPAGSAREKLPPTPKKAEPPVVTLDDLFRKTQSSPRIY
YLPLSDEEVSARLAAQGKAN
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattccctgtgctgaagaaccggcccatcgatcaatggaaagttactgagttg
aaagatgaacttcgaaagaggaagctgcctgtaaaaggtctgaaagaagaacttgtgagg
cgtctctttgaatctattgagagtgaagaggcatctgacgaatctgctgaagatgtcgga
gccaatgaaggtgcacccattggcaaagacgcgaaagatgtgggggcgaatgaacctgct
gatcaggcacctgaagaacatactgttagtcagaaaaccactgtttctgtgacagaaatt
tgtcaggaaagtatggttcatgcatctcaggaaaccgcagttcctctcccagaagttagt
caggaaatcatggcttcctctgtggaacagtcccccggggataatgtggtggcaaaccgt
gaatctctgtcaacagaagccccagcagaacaaggagatcagccagaatcagttgctgga
gaaatttctacagtacaagcagggcaccagcatgctgaaagcatgaacatgcacattgag
gagacaccagaggttgtcgccaatgggacagctgttgtcgctgatgtgaccagtgctgat
ctcaagtcggacttgatctcttctgaagccaagtcagatactgctgaagctagcaaaact
gataaacaggacacattaccaaaacccgtggatgcccaaataccagatgctgatcctatg
gacactgatgttgcagctgcatcaatgaacaatgatgggaagaggtttgttactaagaat
gatttgggtgacaatacttcgatcgataatgaagtgtacagttccgagctcatgaatgag
gatcacaagcccattgtatcaaaatcaaataatcaggtacctgaggttagcccagattta
gggtctccagttaagtgtgagtcaatttctagtgatgatatatcaaataacaagaagaat
ataaaggataacatgaacgctaataattttgatttagaactagaggtcaagccagagatg
gtcaaaccatcatccggcattacttccttaggtggagaattgcagccattggatgatgac
aaagagttggtcaagaatcagttctcttttgaagacatagattccactgccaatgtagat
gaagttggctctccagagaaattaaatttagacaggagttcaggtgatgagtcattggag
gatgatgttatggagattaaacaacttgatttcagtgttaaatctgatgatctcagagga
aagactgagcctaactcctcagaacatgtgaaagaggtgtctcttcctgattctgtcgtc
aagggctcctctgttgatacaaaggaagttatagctgaagaaaagccatcagcttcaact
gaaaagaggaaacttcaagctcaagaaactgttgcaaacactgagccaatcaaacgtcag
cgtcggtgggctgcagatagtggcaatgttccagaaagacaaccattgattcaaagtggt
tttgatgctcctaatgatattctccagcctgccttaaaacgttctcttggcagggctgat
tcgacagcaagtggggattctccaaaggagaggattgtgccaccatctcagaaacctgca
acaacttccttgagaatcgaccggtttgtacgcccatttaccctgagagctgtgcaagag
cttcttggtaaaactggttctgtttgtagcttctggatggatcatataaagacccactgc
tatgttacattctcgtccgtggaggaagctacagctactcgtgatgctgtttacaacctg
cagtggcccccgaacaatggcaattatctgttagctgaatttgttgatccccaggaagtg
aaactcaagcttgaaccccctgccccagcagcaacagcagcggcagttcctattagcccc
gctactacaccaagggaggctccttttcagcaaggtcaggcgaatcaaagtgtgccttgc
caagctgctgctacaccaagggagcaactaccgcctccagcaccccttgtgaagcctcct
acatctgatccagcaggatctgcaagggagaagctcccacccaccccaaagaaggcagaa
cctcctgttgtgacacttgatgatctcttcaggaagacacagtcctctccaaggatttac
tatttgcctttatcagatgaggaggtgtcagcgaggcttgctgcacagggcaaagcaaat
tag
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