Hordeum vulgare subsp. vulgare (domesticated barley): 123448520
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Entry
123448520 CDS
T11213
Name
(RefSeq) probable helicase DDB_G0274399
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123448520
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123448520
5.6.2.5 RNA 5'-3' helicase
123448520
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123448520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
123448520
NCBI-ProteinID:
XP_044981370
UniProt:
A0A287NU34
LinkDB
All DBs
Position
4H:288907743..288915386
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AA seq
1166 aa
AA seq
DB search
MADAPRNPALHDPTELENLKTFECEGNQSEDALDLQNRSKGIRGVEANYALKLANNPPKK
SKLDEHKVAMLGKKRARQTVIINDEDAKQAGIMTISTPRRQSCGTGEVAAGTQNQLAIRD
QRQSEMMGSERSNSATPSNRNADCSVDVELTSPNWSKKLNAEVPPSDGHQQSVPRQATLR
QTMDSKQFKGQPVSSQREDVTGQNTADQKRANKRSLVSKKEASVNNTQYHDTSVERLLQE
VTSDKFWHNPEESELQSVPGSFESAEEYIRVFEPLLFEECRAQLHSSYEESLEVVSRDAH
VMVRVRTVDRRERGWYDVLVLPAHEYKWTFKEGEVAVLSFPRPDSAPQSSNSNRKTAGSY
KDAESECGRLVGRVRRHMPTDTRDPIGAIVRFYAGNPSDSSCGTNVLGKLQPQSTWYLTG
LGSLATTQREYIALHAFRCLNVQMQNAILQPSPEHFPKYQEQPPAMPDCFTPNFSCHLHH
TFNGPQLSAIHWAAMHTAAGTGNGVVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQ
YQHYYAALLKKLAPESYEQVAGSGSSASEAVAAGSMDEVLQSMNQNLFRTLPKLCPKPRM
LVCAPSNAATDELLARVLDRGFIDGEMRVYRPDVARVGVDSQSRAAQAVSVERRTDQLLM
KGREEVIGWLHQLKVREQQLSQEIALLQRELNMVAEAAISQGSFGVDPDMLAQRDRNRDI
LLQKLAASVESRDKVLVEMSRLLILESRFRIGRNFNLEDARASLEASFASEAEIVFTTVS
SSGRKLFSALSHGFDMVVIDEAAQASEVGVLPPLTLGAARCVLVGDPQQLPATVISKAAG
TLLYSRSLFERFQQAGCPTILLSVQYRMHPQIREFPSRYFYQGHLTDSESVANLPDEAFY
RDALMAPYIFYDISHGRESHRDGSSSYQNVHEAQFALCLYEHLQKFLRANGGKRACVGII
TPYKLQLKCLQREFAEVMNTEEGKDIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADI
RRMNVALTRARRALWVIGNANALMQSEDWAALVADAKARKCFMDLSSIPSDFLAMNNFSN
ARGLNSSSNTRYMRTSGPRPRHFDMLPAPRMGMTAGEVGHPNPVARNGSYRNLSNDVGHP
GDRSRDNLQFGRIRGPNPSNDPRRQA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcgcctagaaatccagcgcttcatgatcccacagagttagaaaatctgaaa
acttttgaatgtgaaggaaatcaatctgaggatgctttagacctgcaaaacaggtcaaag
ggtattagaggagtagaagccaattatgctttgaagcttgctaacaatcctccaaagaaa
tctaaattggatgaacacaaagtagcaatgcttggtaaaaagcgagccagacaaactgtg
ataattaatgacgaggatgcaaagcaagctggtataatgacaatatcaacccccaggaga
caatcttgtgggactggcgaagtagctgcaggaacacagaaccagctggccatcagggac
cagaggcaatctgaaatgatgggttcagaacgaagtaattctgccaccccaagtaataga
aatgcagattgcagtgttgatgttgaattgacatctccgaactggtcaaagaaattgaat
gctgaagtacccccttcagatgggcaccaacaatctgtaccaaggcaggccactttgagg
caaaccatggattccaaacagttcaagggccaaccagtctcttctcagagagaagatgta
acagggcagaacacggcagatcagaaacgagccaacaagaggtctcttgtttccaagaaa
gaagcttcagtaaataatacacagtatcatgacacatctgttgaacgacttctacaagaa
gtgacaagtgataaattctggcataatccagaggagtcggaacttcaatctgttcctgga
agctttgaatctgctgaggagtacattagagtctttgagcctttgctttttgaggaatgc
agagctcagctacacagttcttatgaggaatctcttgaggttgtatcaagggatgcacat
gtaatggtgcgcgttagaaccgtggataggcgtgaaagagggtggtatgatgttcttgtt
ctaccagcacatgaatataaatggacttttaaagaaggagaagttgcagttttgtcattc
cctcggcctgattcagctccacagtcaagtaattctaataggaagactgctggttcatat
aaagatgccgagtcagagtgtggacggcttgttggtagagtccggcgccatatgcctact
gatacacgtgatcccattggagcaattgtccgcttttatgctggaaacccgtctgattct
agctgtgggactaatgttctagggaaacttcaacctcaaagcacctggtatctaactggt
ctcggttctcttgcaacaacacagagggagtatattgcgttgcacgcattccgctgtctt
aatgtgcagatgcaaaatgcaattcttcagccgagtccagaacacttcccaaagtaccaa
gagcagccacctgcgatgcctgattgcttcactccaaatttttcttgtcatctccatcat
acattcaatgggcctcagctatcagcaattcattgggctgcaatgcatacagctgctggc
acaggcaatggagtagtgaagaaacaagaaccatggcctttcacattggtacaaggtcct
ccagggacagggaaaactcatactgtttggggaatgttaaatgttattcatcttgttcag
tatcaacattactatgctgctctgctaaaaaagcttgctcctgaaagttacgagcaagtt
gctggtagtggtagcagcgcctcagaagctgttgccgcaggctcaatggatgaagttttg
cagagcatgaatcagaacctgttccgcactcttcccaagctttgccccaaaccgcggatg
cttgtttgtgccccatcaaatgctgcaacagatgagctgcttgctcgtgttctagatcgt
ggtttcatagatggtgagatgagggtctaccgccctgatgttgcccgtgttggagttgat
tcacagtcccgtgctgcacaagctgtttcagttgagcgacggacggaccagcttttaatg
aagggacgtgaggaagtaattgggtggctgcatcaactaaaagtccgtgaacaacagcta
tcacaagagatagcacttctgcagagggaacttaatatggttgcagaggctgctatatct
cagggttcgtttggagtagatccagatatgcttgctcaaagggatcgtaaccgtgatata
ctgcttcagaaacttgctgcttctgtggaaagcagggataaagtactggttgagatgtca
cgcctgttgatattagaaagcaggttccgtattggcagaaacttcaatctggaagatgct
agagctagtctggaagctagttttgccagtgaagcagaaattgtttttactacagtatca
agcagtggtcgcaagttattttctgcccttagtcatggctttgatatggttgttattgat
gaggctgctcaggccagtgaagtaggagtcctccctccacttacacttggtgcagctaga
tgtgtcttggttggtgatccacaacagctccctgccactgttattagcaaagctgctgga
actttactctacagcaggagccttttcgagaggtttcagcaagctggttgccctaccatt
ttgctgtcagtgcaatatcggatgcatccccagatccgtgaatttccatcaagatacttc
taccaaggccaccttacagatagtgaaagtgtcgccaacttgcccgatgaggcattctat
agagatgcattaatggcaccttacattttctatgacatctcgcatggacgtgagtcccat
agagatgggtcatcttcataccagaatgtccatgaagcacagtttgcgttgtgtttgtat
gagcatcttcagaagttcctgagagctaatggtggcaagagagcatgtgttggtataatc
actccttataagttgcagttgaagtgtcttcagcgagaatttgcggaagttatgaatacc
gaggaagggaaagatatctacataaacacagttgatgcttttcaaggccaggagcgtgat
gtgattattatgtcatgtgtccgtgcctcaaaccacggtgtcggttttgttgcagatata
cgccgtatgaatgttgctcttactcgagctaggagagctctatgggttattggtaatgcc
aatgccctcatgcagtcagaggattgggcggcactggtagcagatgcaaaggcgaggaag
tgtttcatggacttgagcagcatcccgagtgacttcctagctatgaacaacttttcaaac
gcccggggcctgaattcttcaagcaacacaaggtacatgaggactagtggaccgagaccg
aggcatttcgacatgcttccggcacccaggatgggcatgacagccggtgaggttggccat
cccaaccctgttgcgagaaatggtagttaccggaatctgtccaatgacgtggggcatcct
ggtgatagatctagagataatttgcagtttgggaggatcaggggtccgaatccgtccaat
gatccgaggagacaagcctaa
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