Hordeum vulgare subsp. vulgare (domesticated barley): 123448812
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Entry
123448812 CDS
T11213
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
123448812
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Ortholog
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
123448812
NCBI-ProteinID:
XP_044981766
UniProt:
A0A8I6XCP7
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Position
4H:complement(425232774..425240777)
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AA seq
1168 aa
AA seq
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MASGSRATPTPTRSPSSARPSAPHQHHTQSSGGSTSRAGGGGGGAAGSAAATESVSKAVA
QYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPTPSSEQQIAAYLSRIQRGGHIQPFGCTL
AVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSSAAPPPVSLGADARLLFSPSSGVLLE
RAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQK
LAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAESRRGDLE
PYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAAVRVIQDPAMPQPLCLVGSTLRSPHG
CHAQYMANMGSIASLVMAVIISSGGEDEHNMTRGVIPSAMKLWGLVVCHHTSPRCIPFPL
RYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLV
KCDGAALFYHGKYYPLGVTPTEAQIKDIIEWLTVCHGDSTGLSTDSLADAGYPGATALGD
AVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKS
RSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGQVQLGELELRGIDELSSVAR
EMVRLIETATVPIFAVDTYGCINGWNAKVAELTGLTVEEAMGKSLIKDLIFKESEEIVEK
LLSQALRGEEGTNVEIKLKTFGSEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDITGQK
VVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMENLTGWSRGEVVGKLLV
GEVFGNCCRLKGPDALTKFMIALHNAIGGQDSEKSPFSFFDKNGKYVQALLTANTRSKMD
GETIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSLLE
MTDLKDDQRQFLETSAACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGNVMNAVVSQVM
ILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVRFAPTENGWVEIQVRPNV
KQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSNARWTTQEGIGLSVCRKILKLMGGEVQ
YIRESERSFFLIVLELPQPRRSETRDRS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaggaagccgcgccacgcccacgcccacgcgctccccctcctccgcgcggccc
tctgcgccgcaccaacatcacacgcagtcctcgggcgggagcacctcccgcgcaggaggg
ggagggggaggcgcggccgggagcgcggccgccaccgagtcggtctccaaggccgtggcg
cagtacaccctggacgcgggcctccacgcggtgttcgagcagtcgggcgcgtcggggcgc
agcttcgactactcccagtcgctgctcgcgccgcccactccctcctccgagcagcagatc
gccgcctacctctctcgcatccagcgcggtggccacatccagcccttcggctgcacgctc
gccgtcgccgacgactcctccttccgcctgcttgccttctccgagaacgctgccgacctg
ctcgacctgtcgcctcaccactccgtcccgtcgctcgactcctccgcggcgcctccccca
gtctctctcggcgccgacgcgcgcctcctcttctctccctcctccggcgtcctcctcgag
cgcgccttcgccgcgcgggagatctcgctgctcaacccgctctggatccactccagggtc
tcatccaagcccttctacgccatcctccaccgcatcgacgtcggcgtcgtcatcgacctc
gagcccgcccgcaccgaggaccccgccctctccatcgctggcgcagtgcagtcccagaag
ctcgccgtccgcgccatctcccgtctccaggcgctccctggcggggacgtcaagctcctc
tgcgacaccgttgtggagcacgtccgtgagctcacgggctatgaccgcgtcatggtgtac
aaattccacgatgacgagcatggggaagttctcgccgagagccggcgtggtgacctcgag
ccctacctcggtttgcattatcctgccactgatatcccgcaggcatcacgcttcctgttc
cggcaaaaccgtgtgcggatgattgctgattgccacgcagctgcggtgagggtcatccag
gaccctgcaatgccacagccgctgtgcttagttgggtcgactcttcgctccccacatggg
tgccatgcgcagtacatggcaaacatggggtcgattgcatctctcgtcatggcagtgatc
atcagtagcggtggggaggatgagcacaacatgacgcggggcgtcatcccgtcggcaatg
aagttgtgggggttagtggtgtgccaccacacatctccacggtgcatccctttcccactg
cggtatgcatgtgagttcctcatgcaggcctttgggctgcagctcaacatggagctgcag
cttgcgcaccaactatcagagaaacatattctcagaacacagacgttactgtgcgacatg
ctactccgggattcacctactggcattgtcacacagagcccaagcataatggaccttgtg
aagtgtgatggtgctgcactgttttaccacgggaagtactacccacttggcgtcaccccc
acagaggctcagattaaggatatcatcgagtggttgacggtgtgtcatggagactcgaca
gggctgagcacagatagcctggctgatgcaggctaccccggtgctactgcattaggggat
gcagtgtgcggaatggcagtagcttatatcacgccgagtgattatttgttttggttccgg
tcacacacagccaaggagataaaatggggtggtgcaaagcatcatccggaggataaggat
gatgggcagcggatgcacccacgatcatcattcaaggcatttcttgaagtggtgaagagt
aggagcttaccttgggagaatgctgaaatggatgcaatacattccttgcagctcatattg
cgggactccttcagagatgcaggagagggcactagtaactcaaaagccattgtcaatggt
caggttcagcttggggaactagaattgcggggaatagatgagctgagttcagtggcaagg
gagatggttaggttgatcgagacggctacagtacccatctttgcagttgatacttatgga
tgtataaatgggtggaatgcaaaggttgctgagttgactggcctcacagttgaagaagct
atgggcaaatcattaattaaagatcttatcttcaaggaatctgaagaaatagttgagaag
ctactctcgcaagctttaagaggtgaagaaggcacaaatgtggagataaagttgaagaca
tttgggtcggagcaatctaaaggaccaatttttgttattgtcaacgcctgctctagtagg
gattacaccaaaaatattgttggtgtttgttttgtcggccaagatatcacagggcaaaag
gtggtcatggataaatttgtcaacatacaaggggattacaaggctattgtacacaatccc
aatcctctaataccgccaatatttgcttcagatgagaacatttgttgttctgaatggaat
acggcaatggaaaacctcacaggatggtcgagaggagaagttgttggtaagcttctggtt
ggggaggtatttggaaattgttgccgacttaagggcccagatgcactgacaaagttcatg
attgcccttcacaacgctataggagggcaggattctgagaagtcccccttttcatttttt
gacaagaatggtaaatatgtacaggccttattgaccgcaaacacaaggagcaaaatggat
ggtgagaccataggtgccttctgcttcttgcagattgcaagccccgaattacagcaagcc
tttgagattcagagacaacaagaaaagaagtgttatgccaggatgaaggagttggcttac
atttgccaggagataaaaaaccctctcagtggtatacggtttacaaactccctgttagag
atgactgatttaaaggatgaccagaggcagtttcttgaaactagtgctgcttgtgagaag
cagatgtccaagattgtaaaggatgccagcctccaaagtattgaggacggctctttggtg
cttgagaaaggtgaattttcacttggaaatgttatgaacgctgttgtcagccaagtgatg
atattactgagagaaagagatttgcaacttattcgagatatccctgatgaaatcaaagaa
gcctcggcatatggtgaccaatatagaatccagcaagttttgtctgactttttgctaagc
atggtgcggtttgctccaactgaaaatggctgggttgagatacaagtcagaccaaatgta
aaacaaaattctgacggaacagaaacaatgctcttcctcttcagatttgcctgtcctggt
gagggcctcccccctgacattgtccaagatatgttcagcaacgcccgttggacgacccaa
gaaggcattggactaagcgtatgcaggaaaatcctcaaattgatgggtggtgaggtgcag
tacatcagagagtcagagcggagtttcttcctcatcgtgctcgagctaccccagcctcgg
cgatcagagactagggatcggagctga
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