Hordeum vulgare subsp. vulgare (domesticated barley): 123449434
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Entry
123449434 CDS
T11213
Name
(RefSeq) plant-specific TFIIB-related protein 1
KO
K03124
transcription initiation factor TFIIB
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123449434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123449434
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
123449434
Prokaryotic type
Archaeal type
TFB
123449434
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
HTH_Mga
TRAFD1-XIAF1_ZnF
Motif
Other DBs
NCBI-GeneID:
123449434
NCBI-ProteinID:
XP_044982598
UniProt:
A0A8I6XK04
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Position
4H:549031141..549035393
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AA seq
532 aa
AA seq
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MSLPTQCPYCRSPAPARCATTQPPLSRAVSECSSCARLVLERHLHTHPFFPLLPSIHPLP
LVTPDLAAAAPAPSSPAPNDDDDPFLPAGFVSAFSAFSLERHPVLARSASAFSGQLAELE
RALAVDAAASSTPDPAGPMVSVDSLRAYLQIVDVASILRLDRDIADHAFDLFKECSSATC
LRNRSVEALATAALVQAIREAREPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNS
NSIAVHMPRFCNLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDKR
KTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPNYTPATPPEKAFPMTNIYSARSSSGK
DLYQDKLLDNIKQKGSEAAEPDHMVIVREDEDKKTAPPGWPPSKHEPHDLNQAGWQPNVP
FSASPKLDRDNMETNVRGFNLNEESCPMDCEKPDVSMKPPFADRWPTEAKVLPSPPSRQP
LPWQLKQAGSATGPSSYPRSREMQLGLGMDFLSGRGKRSAGDGGDGRDKEGK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgccgacgcagtgcccctactgccggtcccccgcgccggcgcggtgcgccacc
acgcagccgccgctctcgcgcgccgtctctgagtgctcctcctgcgcccgcctcgtcctc
gagcgccacctccacacccaccccttcttccccctcctcccctccatccacccactcccc
ctcgtcacccccgacctcgccgccgccgcccccgcgccctcctccccggcccccaacgac
gacgacgaccccttcctccccgccggcttcgtctccgccttctcggccttctccctcgag
cgccaccccgtcctcgcccgctccgcctccgccttctccggccagctcgccgagctcgag
cgcgcgctcgccgtcgacgccgccgcctcctccaccccggaccccgcgggccccatggtc
tccgtcgacagcctccgtgcctacctccagatcgtggatgtcgcctccatcctcaggctc
gaccgggacatcgccgaccacgccttcgacctcttcaaggagtgctccagcgccacctgc
ctcaggaaccgcagcgtcgaggcgctggccaccgccgcgctcgtgcaggccatccgcgag
gcacgggagcccaggacgctgcaggaaatctccacagctagcaatcttcctcagaaagaa
ataggaaaatacatcaaaatactgggcgaatctcttaaactgagtcaacctcttaacagc
aattcaatagcagttcacatgcctcggttttgcaacctcctccagctcaataaatcagcc
caggaacttgcagcccacataggcgaggtggttgttaacaaatgcttctgcacgcggcga
aaccctataagcatatctgctgctgctatctaccttgcatgtcagcttgaagacaagcgc
aaaacccaggcagagatctgtaaggttacaggccttacagaggtcaccctacgcaaagtg
tataaagagctgttggaaaattgggacgatttgctaccccctaactacacaccagctaca
ccaccagagaaagctttcccgatgacaaacatatattctgcgcgttcgtctagcggaaag
gatctttatcaggataagttgctggataatatcaagcaaaaaggctctgaagctgcagag
cctgatcacatggtaattgtaagagaggatgaagataagaaaactgctcctcctggttgg
cctccttcaaagcatgagccccatgatttgaaccaggcgggttggcagccgaatgttcca
ttttcggcgtctccgaaattggaccgcgacaatatggagacaaacgttcgtgggtttaat
ctcaatgaggaatcatgtccaatggattgtgaaaagccagacgtttcaatgaagccaccc
tttgcggatcgatggccgactgaagcaaaggtgcttccatctccccctagcagacagcct
ctgccatggcagcttaagcaagcgggttcggcaacggggccatcatcttatccgaggagt
cgtgagatgcagctaggcttgggcatggactttctgtctgggcgtgggaaaaggagcgct
ggggatggcggcgatggccgtgacaaagagggcaagtga
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