Hordeum vulgare subsp. vulgare (domesticated barley): 123449524
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Entry
123449524 CDS
T11213
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03440
Homologous recombination
hvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123449524
03460 Fanconi anemia pathway
123449524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hvg03032
]
123449524
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123449524
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
123449524
DNA replication proteins [BR:
hvg03032
]
Eukaryotic type
DNA Topoisomerases
123449524
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
123449524
FA (Fanconi anemia) pathway
123449524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
123449524
NCBI-ProteinID:
XP_044982706
UniProt:
A0A8I6YJH0
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Position
4H:complement(561567043..561576663)
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AA seq
982 aa
AA seq
DB search
MPPGGGGIRVLNVAEKPSVAKAVAEILSRGGMQSRAGRSRYNRVFEFNYAIGAHACHMLV
TSVTGHLMELDFDDRYRRWHSCDPAELFHAPVRKVVPQDKQDIKRTLEEEARTCQWLVLW
LDCDREGENIAYEVVDICAGANRNLNIWRARFSALIPREIHEAVQHLARPNKLFADAVDA
RQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVLSYGPCQFPTLGFIVERFWEIQAH
EPEEFWTINCSHTSDEGTASFIWIRGHLFDYSSAVVIYEMCVQEPMATVQNVRNQEKLKY
PPYPLSTVELQKRASRCCRMSSEHTMKVAEELYQAGFISYPRTETDSFSPNTDLHAIVRE
QADHPDWGTYAQRLLNPEERLWRNPSNGGHDDKAHPPIHPTKFSTGENNWSPDHKKLYEL
VVRHFLACCSQPAVGAETTVEVDIAGEQFNASGRVVLAKNYLDVYRYDSWGGSLLPTYNI
GQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHEHIKKLLDRCYATKDAN
SRFSPTNLGEALVMGYDEMGYELWKPYLRAMMEADMKSVSVGTKSKAQVLEGCLQQMKAC
FLDARANKVKLLDAMGTFFARSNRPINETQTTIEVVRPCGACNESEMLLKRRPNGGFMVG
CRGFPQCRNVVWLPGSVAEAAVTQQICPTCVPGPVYKIQFKFNRRDIPPSFDVDHLGCVG
GCDDVLKELTEMSRFQHHNQTTTPARSQSQSQTTSTSGVRQGAPRQDLPTGSRSTGQFAN
QHTPVVNPQGRGQSQTPSGIGARQGTPRQDLHSVFRTASQFANEQQTPGVNPQGFRSTHT
GVTQNSRNASSSDAGQVLCTTCGEACINRTANTEANRGRKFYKCQNPGCGFFVWEDELDN
VAPRGRGRGSRGGGRQASASASASASAGTRGGGRGRRGRGRGRNADAEGMTFVSATGDMV
HGCCFTCGDPSHFASACPNRGR
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccggcggcggcgggatccgcgtgctgaacgtggcggagaaaccgtcggtggcc
aaggccgtggctgagatcctgtcgcgcggggggatgcagtcgcgggcgggccggtcccgc
tacaaccgcgtcttcgagttcaactacgccatcggcgcccatgcctgccacatgctcgtc
acctccgtcacgggccacctcatggagctcgacttcgacgaccgctaccgccgctggcac
tcctgcgaccccgccgagctcttccacgcccccgtccgcaaggtcgtcccccaggataaa
caggacataaagagaacattggaagaggaagctaggacgtgtcaatggcttgtgttatgg
cttgattgtgatagagagggcgagaatatcgcatatgaagtggttgacatttgtgcgggc
gccaaccgtaatctaaacatttggagagctcgtttctcagctttgattcccagggaaata
catgaagctgtgcaacatctcgccagacccaacaagctatttgctgatgctgtggatgca
agacaggaaattgaccttcgcataggtgcctccttcactaggtttcaaacaatgctgcta
aaggatgcatttgtccttgatgtcagtggggaagaaaggaatatggttctgagctatggt
ccttgccagtttccaactctaggatttattgttgagcgtttctgggagatacaagctcac
gaacctgaagagttctggacaataaattgttctcacacttcggatgaaggcactgcgtca
tttatttggatacgtggccatttgtttgattactcatctgctgttgtgatctatgaaatg
tgtgtccaagaaccaatggcaacagtacagaatgtcaggaatcaggagaaactaaaatac
cctccatacccactaagcaccgtggagcttcaaaaacgtgcttctaggtgctgcagaatg
agttcagagcacacaatgaaggtggctgaagaactttaccaagctggattcattagttat
cccaggacagagactgatagtttctctccaaacactgacctgcatgcaattgtacgtgaa
caagcggatcaccctgattggggaacgtatgcccaacgtcttctgaatcctgaagaaagg
ctctggagaaatcccagcaatggtggtcatgatgacaaggcacatcctcctattcatcca
acaaagttttcaactggtgaaaacaactggtctccagaccacaagaaattgtatgagcta
gttgttcgccatttccttgcttgttgctcccaacctgcagttggagccgagacaactgtg
gaagttgacattgctggtgaacagttcaatgcatcagggcgtgtcgtacttgctaaaaat
tatttggacgtttatcgctatgactcatggggtggttcattacttccaacatacaacatc
ggacagcagtttgttccgacgactttaacacttgattcaggagtgactcgaccaccacct
cttcttgctgaagctgacctccttagctgcatggataaagcaggaatcggcaccgacgca
accatgcatgaacacataaaaaagctacttgaccgttgttatgcaaccaaagatgcgaat
tcacgtttctccccaacaaatcttggggaggcgttggtaatgggttatgatgaaatgggg
tatgagctttggaaaccttatttaagggcaatgatggaagctgacatgaaatcggttagt
gtcggtacaaagagtaaagcgcaagtacttgagggttgtttgcagcagatgaaggcttgt
tttctggatgcaagggcaaacaaagtgaagctccttgatgcaatgggaacattctttgct
aggtcaaatagacctatcaacgagacacaaactaccattgaagttgtaaggccctgtggt
gcatgcaatgagtctgaaatgttactgaagcgaagaccgaatggtggttttatggttggc
tgtcggggctttcctcagtgtagaaatgtagtatggctgcccggatcagttgcagaagct
gctgtgacgcaacaaatttgtcctacctgcgttccaggtcctgtttataagatccagttt
aagttcaaccgaagggatatcccaccaagttttgatgttgatcacctaggttgcgttggt
ggatgtgacgatgtactcaaagagcttacagagatgagtagatttcaacatcataaccag
actacgacaccagcaagaagccaaagccagtctcagactacatctacaagtggtgtaagg
cagggggctccaaggcaggatttacctactggttctcgttcgactgggcaattcgctaac
cagcacacacctgttgtgaacccccaaggaagaggtcaaagccagactccgagtggcatc
ggagcaaggcaggggactccaaggcaggatttgcatagtgtttttcgtacggctagccag
tttgctaatgagcagcagacacccggtgtgaatccacaagggtttcgttcaacccatacg
ggcgttacccagaactcaagaaacgcatcgtcatcggatgcaggtcaagtactctgcact
acatgtggcgaggcctgcataaaccgaactgctaatacagaggcgaacagggggaggaag
ttctacaaatgccaaaatcctggatgcggcttctttgtatgggaggacgagctggataac
gtggcgcccaggggccgtgggcgcggcagccgcggcggcggcaggcaagcatcggcatcg
gcgtcggcgtcggcgtcggcaggtactagaggcggcgggcgaggcaggaggggccggggc
cggggccggaacgcggacgccgagggcatgacgttcgtctcggccaccggcgacatggtg
cacggctgctgcttcacctgcggcgacccttcccacttcgccagcgcatgccccaaccgg
gggagatga
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