Hordeum vulgare subsp. vulgare (domesticated barley): 123449883
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Entry
123449883 CDS
T11213
Name
(RefSeq) endoribonuclease Dicer homolog 1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hvg03036
]
123449883
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123449883
microRNA pathway
RISC loading complex
123449883
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SLFN-g3_helicase
Cas3-like_C_2
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
123449883
NCBI-ProteinID:
XP_044983177
UniProt:
A0A287PYT5
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All DBs
Position
4H:595123973..595134502
Genome browser
AA seq
1971 aa
AA seq
DB search
MAGGGGGGGAGEHPGAVSYWYDACEDDEDASLLCGIDFASSADFDPGLMPLPAMDCGIDF
AASADFNPGFMPAMDCGGVDDGFVAEIDRILESIDAETAPAPQPPPVAPPQPPAERVQEA
AAIAAVANNAVAVVCSEQRSQAGGPRNEARSVEARKETRSVGPRKETTSAEPRKETRRET
QGGSANGGRGGEWRDGKRPRLAPGADGGPRPDSRRRPMLPPPSRGWDERRGRRDFVDRPR
KRDRDRDSNPAHRREARGFWERDRGGKMVFRPGTWEQESEREGKRARTQNGGSMEKNADA
DKAASAHKEKPLAEEQARHYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSICDKMMK
ENRKILAVFLVPKVPLVYQQAEVIRERTGYRVGHYCGEMGQDFWDARKWQREFDSKQVLV
MTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPVVFGMT
ASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVQYDKAATLC
SLHEQIKQMEAAVEEAALCSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQ
KLRAINYALGELGQWCAYKVAQSFLTVLQNDERANYQVDVKFQESHLKKVVDLLHCQLTE
GAAVKSETNDVEMHNTENHNPSELEDGELPDSHAVSVGEHVDEVIGAAVADGKVTPRVQA
LIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLGFIRCASLIGHNNNQEMRTSQ
MQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYVQSRGRARKPGSDY
ILMVERGNLAHETFLRNARNSEETLRKEAIERTDLSHLDGTLLNSIHIPPDSMYQVESTG
AVVSLNSAVGLVHLYCSQLPSDRYSILRPEFIMQKHEKPGGSMEYSCKLQLPCNAPFEKL
EGPICGSIRLAQQAVCLAACKKLHEMSAFTDMLLPDRGSGEGEKTEKNEGDPLPGTARHR
EFYPEGVAEILRGEWILCGRDGCQSTQFIKLYMYSVNCVDVGTSKDPSLAQISNFSIIFG
SELDAEVLSTPMDLFVARTMITKASLVFRGPIEVTESQLVLLKSFHVRLMSIVLDVDVDP
STTPWDPAKAYLFVPVGAEKCAGALREIDWTLINNIVNTDAWNNPLQKARPDVYLGTNER
TLGGDKREYGFGKLRNGTAFGQKAHPTYGIRGAIADFDIVKASGLVPSRDRGYSSDYQNQ
GKLFMADSCWDAKDLSGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYA
DYYKQKYGVELVYKKQPLIRARGVSYCKNLLSPRFEHSEAREGDFSENVDKTYYVYLPPE
LCLVHPLPGSLIRGAQRLPSIMRRVESMLLAVQLKETIDYPVPAVKILEALTAASCQETF
CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALNKTLQSFIQ
ADRFAPSRWAAPGVLPVFDEETRESEPSIFGGESIPGNELQKDYDDDYTDSIQEEGEIDG
DSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPQEIPPPKPYNIP
ESILKGIDFETLEGILGTKFQNKGFLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITK
HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVRRKLHGHLRHGSSALETQIREFVKDVRK
EISKSGFNSFGLGDCKAPKVLGDIIESIAGAVFLDSGYDTSAVWKVFQPLLEPLVTPETL
PMHPIRELQERCQQQAEGLEYKASRAGNVATVEVFVDGVQIGVAQNPQKKMAQKLAARNA
LVVLKEKETAAKKETEKDGDKSNAGFTRQTLNDTCLRRQWPMPQYRCINEGGPAHAKRFV
YAVRVNTSDRGWTDECVGEPMPSVKKAKDSAAMLLLELLNRSFPDKPGGKK
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggaggaggaggaggtggcgcgggcgagcacccgggggcggtgtcctactgg
tacgacgcctgcgaggacgacgaggacgcgtcgctgctgtgcggcatcgacttcgcctcg
tccgccgacttcgacccggggctcatgcccttgcccgccatggactgcggcatcgacttc
gccgcctccgcggatttcaaccccggcttcatgcccgccatggactgcggcggcgtagac
gacggattcgtcgccgagatcgaccggattctcgagagcatcgacgccgagacagccccc
gcgccacagcccccgcctgtggctcccccgcaaccgccggcggagcgggtgcaggaggct
gctgctattgcggctgtggccaacaatgccgtggcggtggtgtgctcggagcagaggagc
caggccggcgggcccaggaacgaggcgagaagcgtcgaggcgaggaaggagacgagaagc
gtcgggccgaggaaggagacgacaagcgccgagccgaggaaggagacgagaagggagacg
caaggcggttcggcgaacggcggtcgcggcggggagtggagagacgggaagcgtcctcgg
ctcgcccctggggctgacgggggcccacgccctgattcccggcggcgcccgatgctgccg
ccgccctcgcgtggctgggatgaacggcgcgggaggcgcgacttcgtcgacaggcctcgc
aagcgcgaccgcgaccgcgacagtaaccctgcccaccggcgcgaggctcgaggattctgg
gagcgggaccgcggcggcaagatggtgttccgccctggcacctgggagcaggagtctgag
cgcgagggaaagcgtgccaggacacagaacggaggctccatggagaagaatgcagacgca
gataaggcggcttccgcccacaaggagaagcctctcgccgaggagcaggccagacattac
cagttggaggtgctcgagcaagcaaagagcaggaacacaatagccttcctcgagaccggc
gcagggaagaccctcattgctgtgctgctcatcaaaagcatatgtgacaaaatgatgaag
gagaacaggaaaatacttgccgtgttcttggttcccaaggtgcctcttgtgtatcagcaa
gctgaggtgatacgcgagaggactggctatcgggttgggcactactgcggagagatgggt
caggatttctgggatgctaggaagtggcagcgagagtttgattccaaacaggtactagtt
atgacagctcaaattttgttaaacatcctcaggcacagtattattaaaatggacgccata
catcttttaattttagacgagtgccatcatgcagtgaaaaagcatccatattctctagtg
atgtcagaattttatcacacaactccgaaggataagagaccagttgtttttggtatgaca
gcttctcctgtcaacctaaagggagtcactagccaagaagattgtgccatcaagataaga
aatcttgagagtaaactggattccgttgtttgtactatcaaggatcggaaggagcttgag
aaacatgttcccatgccttctgaagttgttgtccaatatgacaaagcagccaccctttgt
tccctgcacgagcagatcaaacaaatggaagctgctgttgaagaagctgcactctgtagc
tctaagagaacaaagtggcagtttatgggagccagggatgctgggtctagagatgagctg
cgccttgtctatggtgtttctgagcgtacagaaagtgatggtgcagctaatttaatccag
aagttgagagctataaattatgctttaggtgaactaggacaatggtgtgcttataaggtt
gcacagtccttcttgacagtattgcagaatgatgaaagggcaaactatcaggttgatgta
aagtttcaagagtcgcatttaaagaaggttgttgatttattgcactgccagttgactgag
ggagctgcagtgaaaagcgagacgaatgatgttgagatgcataacactgaaaatcacaac
ccaagtgaacttgaagatggggagctgcctgatagccatgctgtttctgtaggtgaacat
gtagatgaggttatcggagctgccgtggcagatgggaaagttacccctagggtgcaggct
ttaatcaaaatccttctcaagtatcagcatactgaggatttccgtgctatcatctttgtg
gagcgagttgtcacggcattagttcttcctaaggtgcttgcagagcttccatctttaggc
tttatccgatgtgcaagcttgataggtcataacaacaatcaagagatgcgcacaagccaa
atgcaggatacaattgcaaaatttcgtgatggtcgtgttacactgttagttgcgactagt
gtcgctgaggaaggacttgatattcgacagtgcaatgttgtcattcgctttgaccttgca
aagacggttttggcctacgtacagtctcgtggtcgtgcaagaaagcctggatctgactac
atattgatggttgaaaggggaaatttggcacatgaaactttcttgaggaatgctcgaaat
agtgaggagacgttgagaaaagaggctatagaaagaactgatctcagtcatcttgatggt
actctgttaaattccattcatataccacctgattcgatgtatcaggtcgaatcaacaggt
gctgttgtcagcttgaattctgcagttgggctcgtacatttgtactgttcacagcttcca
agtgacaggtactcaattcttcgtccagaatttattatgcaaaaacatgagaagccaggg
ggttccatggaatattcttgcaaacttcaacttccctgtaatgctccatttgagaaactc
gagggtcctatatgcggatcaattcgcctggcacagcaagctgtttgtttggctgcctgt
aagaagctgcacgagatgagtgccttcacagatatgcttttacctgatagaggaagtggg
gaaggagagaagaccgaaaagaatgaaggtgatccactccctggaacggcacgccataga
gagttttatcctgaaggtgttgctgaaattctgagaggagaatggattttatgtggaaga
gatggctgccaaagcactcaatttattaagttgtatatgtattctgtcaattgtgtggat
gtagggacatctaaggacccttcccttgcacaaatatcgaatttttctattatttttggc
agtgagctggatgcagaggttctgtcgacaccaatggatctctttgttgccaggacgatg
ataacaaaagcatctcttgtattccgtggaccaattgaagttacagaaagtcagctggtt
ctgctgaagagctttcatgttaggctcatgagcatagtccttgatgttgatgttgatccc
tcaactacaccttgggatccagcaaaagcatacctctttgtccctgtaggagctgagaag
tgtgcaggtgctttaagagagatcgattggactttaatcaacaacattgtgaacactgat
gcctggaacaacccacttcagaaggcacgaccagatgtctatctaggcaccaatgagagg
acactcggtggagataagagagagtatgggtttggaaaattgcgtaatggaaccgctttt
ggacagaaggcacatccaacttatggtattagaggagccattgctgactttgatattgtt
aaagcatctggcttagttccttctcgtgatagagggtattcaagtgactatcagaaccaa
ggcaagttgttcatggcagattcatgctgggatgctaaagatctttctggaatggttgtc
actgctgcccactcaggaaagcggttctatgtggactgtatttgttataacatgaatgca
gaaaattcatttcctaggaaggaaggctatctggggcctttggaatatagctcatatgct
gattactacaagcaaaaatatggtgtggagctagtgtataagaaacaacctcttatacgt
gcacgtggtgtttcctattgcaagaatcttctgtctcctagatttgagcattctgaagct
agagaaggtgatttttcggagaacgttgacaaaacatattatgtctatttaccacccgaa
ctttgccttgtgcacccacttcctggatcactcattcgtggagctcagaggttgccatca
ataatgagaagggttgagagtatgcttcttgcagttcaattgaaggaaacaattgattat
cctgttcccgcagttaagatattagaagccttgactgctgcatcatgccaagaaacattc
tgctatgaaagagcagagttactgggtgatgcatacctgaaatgggtcgtgagtagattc
cttttcctaaaatatcctcagaagcatgagggtcagcttacaaggatgaggcagcagatg
gtcagtaacatggtcctctatcaatttgccctgaataaaactcttcaatcatttattcaa
gcagatcggtttgccccatcaagatgggcagctcccggagtactacctgtatttgatgaa
gagacgagagaatctgaaccgtccatctttggtggggagtcaatacctggtaatgaatta
cagaaggattatgacgatgactacaccgatagcattcaagaggagggcgaaattgatgga
gattctagctgctatcgtgttctctcaagcaagacattagcagatgttgttgaagcactt
attggggtctattatgtagcaggagggaaaattgctgcgaaccacctgatgaagtggatt
gggatccacgccgaattggatcctcaagagatccctcccccaaagccatataatatacct
gagagcatattgaaaggcattgactttgagacattggaaggcatcttgggtaccaaattc
cagaataaaggttttcttattgaggctataacgcatgcatccaggccatcttctggtgtt
tcctgttaccagcggttggaatttgttggtgatgctgtgttggatcatctcatcacgaag
catctattttttacatatactgatctacctcctggtcgcttgactgacctgagagctgcg
gctgttaataatgagaactttgcaagggttgcagttaggcgtaagctgcacggacatctt
cgccatggctcatctgcactggaaacacagattcgggagttcgtgaaggatgtccgaaaa
gagatttcaaaatcaggtttcaattcttttggacttggggattgcaaggctcctaaagtt
cttggagacattattgagtctatagctggggcagtattcctggatagtgggtatgacacc
tcggcagtctggaaggtgttccaaccgctcctcgaacctctggtaacgccagagaccctt
ccgatgcatccaattagggagctccaagaacggtgccagcaacaagcagaagggttagaa
tacaaagcatcccgggcaggcaatgtagctactgtggaagtctttgttgatggtgttcag
attggtgtagctcagaatccccagaagaagatggcacagaaattggcggcgaggaacgca
ctcgtggtcctgaaggagaaggaaactgcagcaaagaaagagacagaaaaggatggtgat
aagagcaatgctgggttcaccaggcagaccctgaacgacacttgcttgagaaggcagtgg
ccaatgccgcagtacaggtgcataaacgagggcggccctgctcatgctaaaagatttgtg
tacgcggttagggtgaatacgtcggatcgtggatggaccgacgagtgcgtcggagagccg
atgccgagcgtgaagaaggccaaggactctgccgccatgcttctccttgagcttctgaat
cgaagtttccctgataagcctggcggtaagaagtga
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