Hordeum vulgare subsp. vulgare (domesticated barley): 123449937
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Entry
123449937 CDS
T11213
Name
(RefSeq) exosome complex component RRP41 homolog
KO
K11600
exosome complex component RRP41
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123449937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123449937
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123449937
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
123449937
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123449937
NCBI-ProteinID:
XP_044983247
UniProt:
A0A8I6WEX3
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Position
1H:complement(497466567..497471276)
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AA seq
242 aa
AA seq
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MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREIQNRS
QQQNNKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID
IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGG
ADVTVGILAKMDKVTLLQMDAKLPMDTFETVMDLATEGCKAIATYIREVLLENTKQLECQ
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgtcaaccctctcaccggattccgcgtcgacgggcgccgccccaacgagatg
cggcagctcaagggcgaggtcggcgtcgtctccagggccgacggctcggcgctcttcgag
atgggcaacaccagggtcatcgccgccgtctacgggccccgagagatccaaaacaggagt
cagcaacaaaacaataaagaggctttggtgcgttgtgagtacagaatggcagaatttagc
actggggatcgaaggagaaagccaaaaggtgacaggcgatcaacagaaatttcgcttgtt
attcgacaaacaatggaggcaagcatattaacacatttaatgccacactcacagattgac
atatttgtccaagttcttcaagctgatggtggaaccaggtctgcatgcatcaatgctgca
acactagcacttgcagatgctgggattccaatgcgagacatagtcacttcttgcagtgct
gggtatctgtgctctactcccttgcttgatctgaattatatagaagacagcgctggaggc
gcggatgtcaccgttggcattcttgcaaagatggacaaagtgactcttctgcagatggac
gcgaaactgccaatggatacattcgagactgtcatggaccttgcaaccgaagggtgcaaa
gcgatcgcaacctacatccgagaggtgctattggagaacacgaagcagctggagtgtcag
cgcggctag
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