Hordeum vulgare subsp. vulgare (domesticated barley): 123451917
Help
Entry
123451917 CDS
T11213
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123451917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123451917
03041 Spliceosome [BR:
hvg03041
]
123451917
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123451917
Spliceosome [BR:
hvg03041
]
Complex B
Other components
Prp19-related factors
123451917
Complex C
123451917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_2
Suf
TPR_12
Mad3_BUB1_I
PPR
ARM_TT21
TPR_16
TPR_CcmH_CycH
ARM_TT21_C
CSN7_HB_subdom
Motif
Other DBs
NCBI-GeneID:
123451917
NCBI-ProteinID:
XP_044984408
UniProt:
A0A8I6XZG1
LinkDB
All DBs
Position
5H:complement(463991787..463994281)
Genome browser
AA seq
782 aa
AA seq
DB search
MAIAMEIVISAEDVAFEEDVLREPFKLSSWVRYLLARRAATPGKRAVIYERALRALPGSY
KLWHAYLTELTDGAHALPVTDRAHANLNATFERALAAGMSRMPRVWHMYASSLLHQRELT
NARRALNRALRSLPVTQHHHVWPLLLRLASLPGCPAPTTHRVLRRHLQFDPDQAEDFIAF
LVSDGRWKDAAEHLVEVINDDGFVSAKGKSKRQLLLDLCGLLAQHPEEVAGLPLPVDSIL
VGSIHKFPDEAGVLWTSLASHYARMSMHDKARDVFEEGITTATTVKDFRMVFEACVHFEH
ALIAVQLDERVQEESPLDVVQDCWLVDRDNADMTMARLERLLERRPELLNSVLLRQNPHD
VQAWHERAKIFDKDPARQAATYVQAVKTVDPTKATGKPHTLWLALAKMYANDGLVDSARL
VFQRATRVNFKAVDHLATIYCQWAQMEVMQQQPERAIDLIRQATSQPSVDASSRAAAAVG
NEPLQMKLHRSQKLWCMYLDLMKTHASFESICAVYDRMHDVGIITPLLVLNHASLLEEHK
RFEDAFRVYERGVNSFKSPHSDAIWEAYLTKFVHRNGNSRPERVRDMFASALLQAPPKKK
KALYLEYAKYEEVFGLVTRAMKIYEDAASAVPACDRLDVYEVYILRATQFCGLVKVRNIY
SQAIHSDLLDKDARAMCIKFADLEIGLGEVARARALYAYVSSFTDPKAHPGFWKRWNDFE
VSHGDETTFREMLRMKRTMTAAASAIEMDAIRAAPKRSLCPCARQQLDHEGIDEQRKRRC
LA
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgccatggagatcgtgatttctgcggaggacgttgcgttcgaggaagacgtc
ctgcgagagccgttcaagctgtcgagctgggtgcgttacctgttggcgcgccgtgcggcg
acgccgggcaagcgcgcagtcatctacgagcgggcgctgcgggccctcccgggctcttac
aagctctggcacgcatacctcacggagctcaccgacggcgcgcacgctctgcccgttacc
gaccgtgcccacgccaacctcaacgccaccttcgagcgcgcgctcgctgcaggcatgtct
cggatgccgcgcgtctggcatatgtacgcctcctccctcctccaccagcgcgagctcact
aatgctcgccgcgccctcaaccgcgcgttgcgctcacttcctgtcacacagcaccaccac
gtgtggccgctcctcctccgcctcgcctccctccccggctgccccgctccgaccacccac
cgcgtcctccgccgccacctccagttcgaccctgaccaagccgaggattttatcgccttc
ctcgtctccgacggcagatggaaggacgctgctgaacacctcgttgaggtcatcaacgac
gacggtttcgtctcggccaagggcaagagcaagcgccagctcctcctggacctgtgtggc
ctgctcgcccagcacccggaggaggtggccgggctgccactgccagtcgactccatcctc
gttggcagcatccacaagttccccgatgaggccggcgtcctgtggacaagtctggctagt
cactacgcgcgaatgagcatgcacgacaaggcgagggacgtgttcgaggaaggcataaca
accgcgaccaccgtcaaagactttcgaatggtgtttgaggcatgcgtgcatttcgaacac
gctttgattgccgtacagcttgacgaacgcgtccaagaggagagcccccttgacgttgtc
caggactgctggttggttgaccgagacaatgcagacatgacgatggcgaggcttgagcgg
ctgctcgaacgccggccagagctgctcaacagcgtgctgctgaggcagaacccgcacgac
gttcaggcgtggcacgagagggccaagatcttcgacaaggatcctgcgaggcaagcagcc
acctacgtccaggctgtcaagaccgttgaccccacaaaggcgaccgggaagccgcacacg
ctctggctggcgttggccaagatgtacgctaacgatggcctcgttgacagcgctcgcctg
gtcttccaaagggccactcgggtgaatttcaaggcggtggaccacctcgccacgatttat
tgccaatgggctcagatggaggtgatgcaacagcaacccgagagggccattgacctcatc
cgtcaagcgacgtcgcagccatcggtcgatgccagtagtcgtgctgccgctgctgtgggc
aacgagcctcttcagatgaaactgcaccgctctcagaagctttggtgcatgtacttggac
ctgatgaaaacacatgcatcatttgaatccatctgcgctgtctacgacaggatgcatgat
gtaggcatcatcacacctctgctggtgctgaaccacgcatcccttctcgaagagcacaag
cgattcgaagacgcgttccgggtttacgagagaggcgtcaactccttcaaaagcccgcac
agcgacgccatttgggaagcctatttgacaaagtttgttcacaggaatggaaatagcagg
ccagagagagtgcgtgacatgttcgcgagtgcgcttctgcaggctccgccgaagaaaaag
aaggccctataccttgaatatgcaaagtatgaggaggtttttggacttgtgacacgtgct
atgaagatatatgaggatgccgccagtgctgtccctgcctgcgacaggcttgatgtctac
gaggtgtacattttacgggctactcaattctgtgggcttgtcaaggttaggaacatatat
agtcaggcaatccatagcgacctactggacaaggacgctagagcaatgtgcataaagttt
gccgaccttgagataggtctcggagaagtcgcccgtgctcgggcgctctatgcctatgtc
tccagctttactgaccctaaggctcatcccggcttttggaaacgatggaacgacttcgag
gtttctcacggcgacgagactacatttagggagatgctccgcatgaagagaaccatgaca
gcggctgcaagcgctatagagatggacgctattcgggccgcacccaagaggtcgttgtgt
ccgtgcgcacgccaacaactagaccatgagggcatcgacgaacaacgcaagaggagatgc
ctagcgtag
DBGET
integrated database retrieval system
