Hordeum vulgare subsp. vulgare (domesticated barley): 123451948
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Entry
123451948 CDS
T11213
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123451948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123451948
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123451948
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123451948
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123451948
U7-dependent histone pre-mRNA processing factors
123451948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
123451948
NCBI-ProteinID:
XP_044984452
UniProt:
A0A8I7B9P7
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Position
5H:complement(514323372..514326676)
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AA seq
693 aa
AA seq
DB search
MASVATAPPAGKRPASGEREGDHMVVTPLGAGGEVGRSCVHMSFKGRTVLFDCGIHPAYS
GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS
DYVKVSKVSVEDMLFDEQDVIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRILYTGDYSREEDRHLKAAEVPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHN
TVSQGGRVLIPAYALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS
MNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK
KNTCVIPGFAVEGSLVKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFLQTSGFLDE
LRPPNIILVHGEANEMGRLKQKLTTQFDGTNTKIVSPKNCQSVEMYFSSEKMAKTIGRLA
EKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTTNITQRISVPYSGSFEVIKYRLK
RIYESVESSTKEPDVPTLIVHERVTIRLESEIHVTLQWSSDSISDMVSDSVVAMILNIGR
QGPKVVPIEEAAKTEEETEKVAQKVVYALMASLFGDVKVAEEGELVISVDGDVAHLDGRS
GDVECENAALKERISTAFRRIQGAVRPIPLSAS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgtggcgacggcgccgccggcggggaagcggccggcgtcgggcgagcgggag
ggcgaccacatggtggtcacgccgctgggggccggcggcgaggtcggccgctcctgcgtc
cacatgtccttcaagggccgcaccgtcctcttcgactgcggcatccacccggcctactcc
ggcatggcggcgctgccctacttcgacgagatcgacccctccgccatcgacgtcctcctc
gtcacccacttccacctggaccacgccgcctcgctgccctacttcctcgagaagactacg
ttcaagggccgcgtgttcatgacccacgccaccaaggccatctacaggctgctgctctcg
gattacgtcaaagtgagcaaggtgtcggtggaggacatgctgtttgacgagcaggacgtc
atccgctccatggacaagatcgaggtcatagacttccaccagacgctggaagttaatggc
atacgcttctggtgctatactgctggccatgtacttggtgctgccatgttcatggtggat
attgcaggtgttcgaattctttacactggtgactactcccgtgaagaagatcggcacctg
aaagctgctgaggtcccccagttctcccctgatatttgcattatcgagtcaacttatggc
gtgcagcaacaccaaccccggcatgtcagagagaagcgcttcaccgatgccatccacaac
actgtttctcaaggggggcgtgttcttatcccggcatatgctcttggtagagcacaggaa
ctattgcttatccttgatgagtattggtctaaccacccagagctccataagattccaatc
tattatgcctcccctcttgcgaagaagtgcatggctgtctaccagacatacataaactcc
atgaatgaaaggattaggaaccagtttgcacaatccaatcccttccatttcaaacatatt
gagcctttgaatagcatagacaacttccatgatgtgggtccgtcagtggtgatggcaagc
ccaggtagtctccaaagtggcctctccaggcagctctttgacaagtggtgcacggataag
aagaacacatgtgttattccaggttttgctgtagaaggctcccttgtgaagaccattatc
aacgagccgagggaagtgacattagcaaatgggctcactgctcctcttcatatgcagatc
ttctacatctcattttcagctcacgccgatttcctacagacgagcggcttcttggatgag
cttcgcccacccaacattattcttgtacacggagaagcaaatgagatggggaggcttaaa
cagaaacttactactcagtttgatggaacaaacacaaaaatcgtgtctcctaagaactgc
caatcagtggagatgtatttcagctctgagaaaatggccaagacaattggcagattggca
gaaaaggtgccagaagtgggagaatcagttagtggcttactcgtgaagaagggcttcacc
tatcagatcatggcccctgaggatctccgtgtgtacacacagttatctactactaacatt
actcagcggatctccgtcccgtattctggttcatttgaggtgatcaagtacagactgaag
cgaatatacgagagtgtggaatcatcaaccaaagaacctgatgttccaacgttgattgtt
cacgagagggtgaccattcgcctggaatccgaaatccatgttacactgcagtggtcctct
gattccataagtgacatggtgtccgattctgtggtggcaatgatcttgaacataggccgt
caaggcccaaaggttgttccgattgaagaagcagcaaagacagaagaagaaacagaaaag
gtggcgcagaaggtggtatatgctctcatggcgtcgctcttcggtgatgtcaaagtcgcg
gaggaaggggagcttgttatatctgtggacggagacgtcgcacatttggatggaaggagt
ggtgatgtcgagtgtgaaaatgctgcactgaaagaaaggatcagcacagcgttccgccgc
atacagggcgcggtaagaccaatcccactttcggcatcctga
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