Hordeum vulgare subsp. vulgare (domesticated barley): 123452107
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Entry
123452107 CDS
T11213
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03020
RNA polymerase
hvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123452107
09124 Replication and repair
03420 Nucleotide excision repair
123452107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123452107
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123452107
Enzymes [BR:
hvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123452107
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123452107
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123452107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
123452107
NCBI-ProteinID:
XP_044984626
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All DBs
Position
5H:complement(520870411..520878684)
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AA seq
1221 aa
AA seq
DB search
MEDDEYEEGMEMDMGGHQHLQHRGYGADEEVEGGYAGGGDGEDEEEEARDEEEITQEDAW
AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHK
ISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHDCEEVTET
AEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEKMS
TNHVYVFKKRQPNKFAYVGEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPY
IRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIG
KRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAE
DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITS
GLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN
SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQ
AAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRP
LFIVENQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMISMTIRDLET
SRHNPGEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
IDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRV
SGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVR
MRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLI
ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFL
GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFL
KERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM
AMAIAPRMLTHEVKGARDKHR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatggatatgggagggcaccagcacctc
cagcaccggggctacggagccgacgaggaggtcgaggggggatacgccggcggcggggac
ggcgaggacgaggaggaggaggcgcgggacgaggaggagattacccaggaggacgcctgg
gccgtcatctccgcctacttcgaggagaagggcctcgtccgccagcagctcgactccttc
gacgagttcatccaaaacaccatgcaggagatcgtcgacgagtcggccgacatcgagatc
cgccccgagtcgcagcacaaccccggccgccaggccgagttcgccgagacactccacaag
atcagctttggtcaaatctatctgagcaaaccaatgatgactgaagctgatggagagact
gctaccttattccccaaatcagcaaggctcaggaacctgacatactcagcaccactttat
gtagatgtatcatacagagttgtaaagaaaggacacgactgcgaagaagttacagaaact
gcggagtatccaaaagtcttcattggaaaggttccaatcatgctgcgttctagttactgt
acactgtttcaacaatctgaaaaggatctcacagaacttggagagtgcccttacgaccaa
ggaggatattttgtaatcaacggtagtgaaaaggttctcattgcccaggagaagatgagc
accaaccatgtctatgtgttcaagaagaggcaaccaaataagtttgcatatgtgggtgaa
gtccgttcaatggcagagaaccaaaacagacctgctagtagcatgtttgttcggatgctt
tctcgagcaggcgcgaaagggggttcatctggtcaatatatccgtgctactctgccctac
attcgtgcagatattccaatcatcattgtgtttagagcactaggatttgttgctgacaaa
gatatactggagcacatatgttacgatttctccgatactcaaatgatggaattgctacgc
ccatctttggaggaagcttttgttattcaaaatcagcaggttgctctggactacatcgga
aagcgtggtgctacagttggtgtaactcgagaaaaaagaataaagtatgccaaagagata
cttcaaaaggaaatgttgccccatgttggtgtaggcgaattctgtgaaactaaaaaggca
tactactttgggtatattattcaccgtctgttgatgtgcgctcttggtcgaagagctgaa
gatgacagagatcattatggcaacaaaaggcttgaccttgcaggtccattgcttggagga
ctgttcagaatgcttttcaggaaattgacgagggatgtgagatcatatgttcagaagtgc
gtcgataatgggaaggaagttaatttgcagtttgctattaaagctaaaaccattactagt
ggattgaagtattcccttgctactggaaactggggacaggcaaaccaagctggtacacga
gctggtgtgtctcaggtgcttaatcgccttacgtatgcgtctacattatcacatcttcgg
aggttgaactctcccattgggcgtgaaggtaaactggcaaaaccacgtcaattgcataac
tctcactggggaatgatgtgccctgctgaaacacccgaaggacaggcttgtggcttggtt
aaaaatcttgccttgatggtttatatcactgttggctctgccgcaaatcctattttggaa
tttttggaagaatggggcacagaaaattttgaggagatatcaccggcagtcattcctcaa
gctgctaaaatatttgtcaatggttgttgggttggaattcataggaatcctgacctattg
gtgaagacacttcgtcgtttaagaagacagattgatgtcaacactgaagttggtgtggtt
cgtgatattcgtcttaaagaacttcgactctatacggattatgggcgttgcagtcgtcca
ctgtttattgttgaaaaccagaggcttctaatcaagaagaaacatatccgagcattgcag
caaagggagactcctgatgaaggctggcatgacttggttgccaaaggatttatagagtac
atagatactgaagaggaggagactactatgatctctatgactatacgtgaccttgaaact
tcgaggcataatccaggggaagcatattctgagacttacacacactgtgagattcaccct
tcactgatacttggcgtgtgtgcgtcaattattccttttcctgatcacaaccagtcacct
cgtaatacatatcagtctgctatgggaaagcaagccatgggaatctatgttaccaattat
cagttaagaatggacacgctggcctatgttctgtattacccacaaaagcctcttgtcact
actcgtgctatggagcatttgcacttcaggcagctaccagctggcattaatgcaattgtt
gctattgcatgttactctggatataaccaagaagattcggttattatgaaccaatcttca
atagatcgtgggttcttcagatcactatttttccgctcttacagagatgaggaaaagaag
atgggaactcttgtcaaagaggaatttggtcgtccaaatagggagaacactatgggaatg
cgccatgggtcttacgataaattagatgatgacggacttgcaccaccgggaacaagggtc
tctggggaagatgtcattattgggaagacatctccaattccacaagacgatgctcaaggg
caagctaccagatactcgaagcgtgatcatagtacttctctgcgtcacagtgaaagtggg
atggtggatcaggttctgttgacaacgaatgctgatggtttaagatttgtcaaggttaga
atgcgatcagtccgcataccacaaataggagataagttcagcagtaggcatggtcagaag
ggaactgttggaatgacttacacacaagaggacatgccatggacaatcgaaggcatcaca
cctgatatcattgtgaatccacatgctattccatcccgtatgactattggccagctgatt
gagtgtattatgggtaaagttgcagctcatatggggaaggaaggagatgcaactcctttc
actgatgttaccgtggataatatcagtaaagcactgcacaagtgtggctatcagatgcgt
ggatttgagaccatgtacaatggtcatactgggagaaaattgactgcaatgattttctta
ggtccaacttactaccagagacttaagcatatggtggatgacaaaattcactctagaggt
cgtggtcctgtccagatactgaccagacagccagcagaggggcgctcacgtgatggtggt
cttcgttttggagaaatggagagggattgcatgattgctcatggcgctgcatttttcctg
aaggaaaggttatttgaccagagtgatgcttacagggtgcatgtttgtgagaagtgtgga
ctcattgccattgccaatctcaagaagaattccttcgaatgcagaggctgcaagaacaaa
actgacattgtccaggtccacataccatacgcatgtaagctcctcttccaggagctcatg
gcgatggcgattgctcccaggatgctcacccatgaggtcaagggtgcaagggataaacat
cgttga
DBGET
integrated database retrieval system
