Hordeum vulgare subsp. vulgare (domesticated barley): 123452196
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Entry
123452196 CDS
T11213
Name
(RefSeq) autophagy-related protein 16
KO
K17890
autophagy-related protein 16-1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04136
Autophagy - other
hvg04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
123452196
04136 Autophagy - other
123452196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123452196
03029 Mitochondrial biogenesis [BR:
hvg03029
]
123452196
Membrane trafficking [BR:
hvg04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
123452196
Others
Specific organelles associated proteins
Auto phagosome
123452196
Mitochondrial biogenesis [BR:
hvg03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
123452196
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ATG16
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR36-Utp21_1st
CFAP251_N
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_WDR19_1st
NBCH_WD40
WDR90_beta-prop_4th
ASA1
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
ODF2_N
Small_EgtBD
WD40_like
Filament
SYCE1
HVO_A0261_N
CEP135_N
Motif
Other DBs
NCBI-GeneID:
123452196
NCBI-ProteinID:
XP_044984740
LinkDB
All DBs
Position
5H:525930322..525933754
Genome browser
AA seq
680 aa
AA seq
DB search
MAGRQHQPGDAGGGRKALMLCVRGTARGVGVRVREAGKGGGRRPWLSPGSKAAWEAEMPL
AVAKAGIFRSIRISLGPVGFRPSSSPSPYPTRAHLTSVKKKKVQSISTEPGGLPWRPGHA
TPSAPFLFRFRLPLHPSQSPSPRRAAPPRRTRHLADAADGIDPSMTQAEADAGKAAIRRA
LRSLRRRHLVEEGAHRPAIEALNRPFAAHALEWKEKAEKNELELQQCYKAQSRLSEQLVS
EINEAKTSKALLKEKEALITTLQSELGQTREENVQLKESLEEKTNALDLLIQEHQAAKAE
LERVLTKLKAVEHENTQLVERLMQAKMVEAEKLNEANAMYEEMVLKLKAAGLGAGGIQHN
AQQEADGVIRRSEAGYVDIMETPIPSTCRVTIRAHDGGCGSIIFQNNTDKLISGGQDQTV
KIWSAHTGALTSTLQGCLGTVNDLAVTNDNKFVIAACSSNKLFVWEINGGRPRHTLTGHT
KNVCSVGASWAKSLVIASSSNDRTIKIWDLQTGFCKSTIMSASNPNTLAFIHGDSICSGH
RDGSLKFHDIRSGKCFATVAGHADVSSVCVTRSKNHVLSSGRDGVHKLFDVRMPTEVVEI
CGTFRAPSNRLIGSWGRACISPDENCIAAGCSDGSVCIWSRSKNEGPTILEGHSLPVVTS
AWSEFGPLATADKNHIHIWA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcgccagcaccagcccggcgacgcaggaggggggaggaaggcgctgatgctt
tgcgtgcggggcacggcacgtggggttggggtgagggtgagggaagctgggaagggagga
gggagacggccgtggctttcgccgggaagcaaggcggcgtgggaggcggagatgcctctc
gcggtcgccaaggccggaatattccgctccatccgcatctcgctcggcccagtgggtttc
aggcccagctcctcccccagcccgtatccgactcgagcccaccttacgagcgtaaaaaaa
aaaaaagtccagtccatatcgaccgaaccgggcgggctcccttggcggcccggacacgcc
accccatcggctccgttcctctttcgctttcgtcttcctctccacccaagtcagtcgccc
tcgccgcgccgcgccgccccgccccgccggacacgccacctcgccgacgccgccgacggg
atcgacccgagcatgacgcaggcggaggcagatgccggcaaggcggccatacggcgcgcg
ctgcggtcgctgcggcggcggcatctcgtcgaggagggggcccaccgccccgccatcgag
gcgctcaatcggcccttcgccgcccacgctttggagtggaaagaaaaggccgagaagaat
gagttggagctgcagcagtgctacaaggctcaatcccgcttgtctgagcagctcgtttcc
gagataaacgaggcgaaaacgtccaaagcgctgctcaaagagaaggaggcgctgattaca
actttgcagagtgaacttgggcagactagagaagagaacgtacagctaaaggagtcgctt
gaagagaagacaaacgctttagatcttctcattcaggagcaccaggcggctaaagcagaa
cttgaacgggtgctgacgaaactgaaagctgtggagcatgagaacactcagctggtcgag
cgattgatgcaagcaaagatggtggaggcagagaagcttaatgaggccaatgcgatgtat
gaggagatggtcctaaagctcaaggcagctgggcttggcgctggcggaatacaacacaat
gcacagcaagaagctgatggcgtcattcgtcggtctgaagctggatatgtcgacatcatg
gaaacaccaatcccatctacatgcagggtcaccatccgtgctcatgatggtgggtgtgga
tctataatttttcagaataacacagataagctaatcagtggtggccaggatcaaactgtc
aagatatggtctgcacataccggtgctttaacctccactctgcagggttgcttggggact
gtcaacgatcttgccgtgaccaatgataacaagtttgtgattgccgcctgtagctctaac
aagttgtttgtatgggaaattaatggggggcgtcctcgtcacactctgactggccacaca
aaaaatgtctgttctgtaggcgcaagctgggcgaaaagtttggtcattgctagttcatcc
aatgaccgcactatcaagatctgggatctccagactggcttctgtaaaagcaccataatg
tcagcaagcaaccccaatacgctagctttcatccatggcgattccatttgctcaggtcat
agggatggaagcctgaagttccacgatatccgcagtggaaaatgctttgccacggtagca
ggtcatgccgatgtcagctcggtctgtgtaacccggagcaaaaatcatgttctttcaagt
gggagagacggtgtgcacaagctttttgatgttagaatgccgacggaggtagtggagatt
tgtggaacattcagggccccgagtaacagattgattggcagctggggcagagcttgtata
agcccggatgagaactgcatagcggctggctgctctgatgggtccgtttgcatatggtcg
aggtcgaagaacgagggtccgaccatcctagagggccattcgctgccggttgttacaagt
gcatggtctgagtttggacctcttgccaccgccgacaagaatcatattcatatatgggct
tga
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