Hordeum vulgare subsp. vulgare (domesticated barley): 123452562
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Entry
123452562 CDS
T11213
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123452562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123452562
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123452562
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Gene cluster
GFIT
Motif
Pfam:
Rcd1
Roquin_1_2-like_ROQ
Motif
Other DBs
NCBI-GeneID:
123452562
NCBI-ProteinID:
XP_044985164
UniProt:
A0A8I7BFH9
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Position
5H:complement(541119476..541126075)
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AA seq
418 aa
AA seq
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MANLSPSLATTPSFDAPSPPPFLPPPGWSTAVPAVDGRDWNMVSAEQLAIDICDPELREK
ALFELFKKREIFQDLAPLLWHSFGTIAALLQEIVSIYPSLSPPTLSPVASNRVCNALALL
QCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDSEVIGF
LLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDIGLRYICATAERFFAVATVLAQMV
QALAEQPSARLLKHIIRCYLRLTENQRACAALNSCLPTVLKDGTFNSFLHDDNVTRRWLQ
QLLSNMSIAGMGGGSSHAGMGGGGSLGGMGGGGSLGGMGGGGSLGGMGGGGSLGGMGGGG
SLGGMGGGGSLGGMGGGGSLGGGMGGGGSLGGGMGGGGSLGGMGGGGPHGGLDHLMGL
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctgtcgccgtccctcgccaccaccccctcctttgatgcaccctccccgccc
ccgttcctgcctccacccgggtggtcgaccgcggtgccggccgtcgacgggagggactgg
aatatggtgtctgcagagcagctcgcgatcgacatctgcgacccagaactgcgtgagaaa
gccctcttcgagctcttcaagaagcgagagatttttcaagatcttgctccactcctgtgg
cactcctttggcaccattgctgcactgctccaggagattgtgtcaatctacccttcactt
tcacctcctactttatcgccagttgcatcaaaccgtgtctgcaatgcacttgcacttctt
cagtgtgttgcttcacaccctgagaccaggatcccattcttgaatgctcacatcccactg
tacctgtacccgttcctgaatactaccagcaagacaagaccttttgagtacttgaggctt
accagcttgggtgttattggtgctcttgtgaaggttgatgattctgaagttattggattt
ctgcttcaaactgaaataatccctctatgtctccgtactatggagatgggcagtgaactt
tccaaaacagtggccacctttattgttcaaaagattctgcttgatgacattgggctgcgc
tacatctgcgcgactgctgagcgtttctttgctgtggccactgttttagcgcagatggtc
caggcgcttgctgagcagccatctgcaaggttactgaagcacataatccgctgctacctc
aggctgacagagaaccagagggcttgcgccgcgctcaacagctgcctccccaccgtgctg
aaggacgggacattcaacagcttccttcatgatgataacgtgacgaggcggtggctccag
cagctgctgagcaacatgtcgatcgccggcatgggcgggggaagctctcacgctggcatg
ggcggaggaggctctctcggaggcatgggcggaggaggctctctcggaggcatgggcggg
ggaggttcccttggtggcatgggcggaggaggctctctcggaggcatgggcggcgggggc
tctcttggaggcatgggcggaggaggctctcttggcggcatgggcgggggaggctctctc
ggcggtggcatgggcggcgggggctctctcggcggtggcatgggcggcgggggctctctc
ggcggcatgggtggaggaggccctcacgggggcctcgaccacctcatggggctatga
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