Hordeum vulgare subsp. vulgare (domesticated barley): 123452629
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Entry
123452629 CDS
T11213
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03030
DNA replication
hvg03410
Base excision repair
hvg03420
Nucleotide excision repair
hvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123452629
03410 Base excision repair
123452629
03420 Nucleotide excision repair
123452629
03430 Mismatch repair
123452629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hvg03032
]
123452629
03036 Chromosome and associated proteins [BR:
hvg03036
]
123452629
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123452629
DNA replication proteins [BR:
hvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
123452629
DNA Replication Termination Factors
ELG1-RFC complex
123452629
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
123452629
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
123452629
Check point factors
HRAD17(Rad24)-RFC complex
123452629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
RuvB_N
Rad17
DUF815
Sigma54_activ_2
Mg_chelatase
AAA_22
AAA_5
AAA_11
AAA_16
nSTAND3
ABC_tran
AAA_2
NPHP3_N
AAA_24
AAA_29
FtsK_SpoIIIE
DUF5906
RNA_helicase
ATPase_2
TsaE
Motif
Other DBs
NCBI-GeneID:
123452629
NCBI-ProteinID:
XP_044985259
UniProt:
F2D478
LinkDB
All DBs
Position
5H:complement(544177714..544182315)
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKHRPKTLDKVIVHEQVAQNLKKFVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG
AGVDKVKMENKTWKIDTGTRTFDLELAMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFSANQVAPPLDWEQYVSEIATEILSEQSPKRLYSVRQKFYELLVNCIPPESILKKLLTE
LMKKLDSDLKHEVCHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLCAAFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgggtggacaagcaccggccgaaaaccctagacaaggtcatcgtccatgagcag
gtcgcgcagaacctcaagaaattcgtggcggagcaggactgcccgcacctcctcttctat
ggcccgccggggtccggcaagaaaaccctaatcatggcgctcatcaagcagatgttcggc
gccggtgtggataaggtgaagatggagaataagacgtggaagatcgatactgggacgagg
acatttgatcttgagctggcgatgttgtcgagttcccaccatgtggaaatgaaccccagc
gatgctggctttcaggacaggtatgttgttcaggaggtcatcaaagagatggccaagagt
aggccgattgatgccaagggcaagagagcatttaaagtacttgtcctaaatgaagttgac
aagctgtcacgagaagcacaacattctctccgtaggacaatggagaaatacagtgcatcc
tgcagactcatattatgctgtaatagctcctcaaaggtgacagaagctgtaaggtcccgt
tgcttgaatgtgcgagtgaatgcacctacagaagatcagattgtacaagtattggaattc
attgggaagaaagagaatctgcaacttccatttggatttgctgctcggatagcagctcaa
tcaaaccgcaacttgaggcgagcaatattattctttgagacatgcaaagtccagcaatat
ccattttcagcaaatcaagtggcgcctcctcttgactgggagcagtatgtgtctgaaata
gcaactgaaatcttgagtgaacaaagccctaaaaggctatattctgtacgccagaaattc
tacgagttacttgtgaattgtatcccacctgaaagcatcttgaagaagttgttaaccgag
ttaatgaagaagttagactctgatttgaagcatgaagtttgtcactgggctgcacactat
gaacacaagatgcgacttgggtccaaggccatttttcatctggaagctttcgtggccaag
ttcatgagcatttacaaggagttcctttgtgctgcatttggttga
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integrated database retrieval system
