Hordeum vulgare subsp. vulgare (domesticated barley): 123452787
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Entry
123452787 CDS
T11213
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123452787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123452787
Membrane trafficking [BR:
hvg04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
123452787
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps35
DUF5752
Motif
Other DBs
NCBI-GeneID:
123452787
NCBI-ProteinID:
XP_044985435
UniProt:
F2D3C1
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Position
5H:550759210..550767767
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AA seq
793 aa
AA seq
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MLPDGGGDDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK
YYELYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKS
KEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDADSINDAVEF
VLQNFIEMNKLWVRMQHQGPVREKDKRGKERNELRDLVGKNLHVLSQIEGVDLEMYKENV
LPRISEQVVNCKDDLAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPSVDIKTVLSQL
MDRLSNYAATSPEVLPEFLQVEAFAKFSNAIGKVIEAQVDMPVVGAVTLYVSLLTFTLRV
HPDRLDYVDQVLGACVKKLSGKEKLEDSRATKQIVALLSAPLEKYSNIVTALELSNYPRV
MDYLDNATTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQDDELDEEDF
KEEQNSVARLIHMLHNDDHDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRRLQ
GQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLEPVAYE
FFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPD
QCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVSKGSSGSVILFIEI
LNKYLYFFEKGIPQITNTVIQDLIELIRTEKQNDSSASDPSAEAFFASTLRYIEFQKQKG
GSIGEKYEQIKAS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccgacggcggcggcgacgacgaggagcgctggctcgccgagggcatcgccggc
gtccagcagaacgccttctacatgcaccgcgccctcgactcgaacaacctcaaggacgcg
ctcaagtactcggcgcagatgctctcggagctgcgcacctccaggctctccccgcacaag
tactacgagctatacatgagggcgttcgacgagatgcggaagctggagatgttcttcagg
gaggagacccgccggggcagctgctccgtggttgacctctacgagcttgttcagcatgct
ggcaacgtgttgccgagactttatctgctctgcacagtaggatctgtgtacattaaatcg
aaagaggctcccgctaaagatgttctgaaagaccttgttgaaatgtgtcgaggcattcaa
catcctctgcgtggacttttcctaagaagttacctctctcagataagccgagacaagcta
cctgatattggttcagagtatgaaggggatgctgatagcattaatgatgcagttgaattt
gttcttcagaattttatagaaatgaacaaactctgggtccggatgcagcatcaggggcct
gttcgggagaaggacaagcgggggaaggaaagaaatgaactgcgtgatctggtaggcaaa
aaccttcacgttctaagccaaatcgaaggtgttgaccttgaaatgtacaaagagaatgtt
cttccaaggatatcagaacaggtagttaattgtaaggacgatcttgcacagttctacctg
atggactgcataatccaagtcttcccagacgaataccatctacagacattggaaacattg
ttgagcgcctttccccagctacagccaagtgttgatatcaaaacggtgctttctcaactc
atggacagattgtcaaactatgcagccacaagtcctgaagtactgccagagtttttgcaa
gtcgaagcttttgcgaagttcagcaatgctattggaaaggtgatagaagctcaagttgac
atgccggttgttggagcagtaactttatatgtatcgctcctcacatttactctccgtgtg
catccagatcggcttgattatgttgaccaagtgctgggtgcatgcgtgaagaaactttct
ggcaaggaaaaacttgaagatagcagagcaacaaagcaaattgttgcacttcttagtgct
cccctggagaaatatagtaatattgttactgcattggagctttcaaattatccccgggtt
atggattacctggataatgctacaacaaaagtgatggctctggtaataattcaaagcata
atgaagaacacaacctgcatttctacttccgacaagatcgaggctctttttgatttaatt
aagggccttataaaagatatggatggggctcaagatgacgagcttgatgaagaggatttt
aaagaggagcagaattctgtagcacgccttattcacatgttgcacaatgatgatcacgac
gagatgttgaagatcttatgtactgttcagaagcatatacttcagggaggtcccaagcgt
ctacctttcactgtgccgtccttagtattctccgctctcaagttggtcagacgattacaa
ggtcaagatggagatgtcactggggaggaagttcccgcaactcctaagaagatatttcag
atcttgcatcagactattgaagcactccaatgtattccttgtccagaattgtctctcaga
ctatatctacaatgcgcagaggctgccaatgattgtgatttggaaccggttgcttatgag
ttctttactcaagcattcatcttatatgaagaagaaatagcggattctaaggcccaaatt
actgcacttcacctaataattggaacccttcagcggatgaatatatttggggtggaaaat
agagacaccctcactcataagacaacagggtactcagcaaaacttctaaagaagcctgat
caatgccgggcagtctatgcatgttcacaccttttctggactgatgaccaagatggaatc
atggatggtgaaagggtcctcctttgcttaaagcgtgctttgcgaattgcaaatgctgct
caacaaatggctaatgtatcaaagggaagcagcggatctgtcattctatttattgaaatt
ttgaacaagtatctgtacttctttgagaaaggaattccacaaatcacgaacactgtcatc
caagatttgatcgaactgatcaggacagagaagcaaaatgacagcagtgcatctgatcca
tctgccgaagctttctttgcaagcactctacgatacatcgaattccagaagcagaaaggt
ggaagcataggagaaaagtatgaacagataaaagcttcgtaa
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