Homalodisca vitripennis (glassy-winged sharpshooter): 124353073
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Entry
124353073 CDS
T09217
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124353073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvi03041
]
124353073
03009 Ribosome biogenesis [BR:
hvi03009
]
124353073
Enzymes [BR:
hvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124353073
Spliceosome [BR:
hvi03041
]
Complex A
U2 snRNP components
U2 related factors
124353073
Complex B
124353073
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124353073
Ribosome biogenesis [BR:
hvi03009
]
Eukaryotic type
90S particles
Helicases
124353073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
SRP54
nSTAND3
AAA_22
Flavi_DEAD
ResIII
ABC_tran
AAA_25
TsaE
AAA_7
T2SSE
AAA_30
ATPase
Motif
Other DBs
NCBI-GeneID:
124353073
NCBI-ProteinID:
XP_046658842
EnsemblRapid:
LOC124353073
LinkDB
All DBs
Position
1:complement(221007549..221029166)
Genome browser
AA seq
724 aa
AA seq
DB search
MAKRRIEVIDPYVTKKRSTEGSSEQLLRPMIPAVIPQTTQKNLQVNPFTGLPYTPRYHEF
LRKRITLPVFEYREEFMKLLAEHQCIVLVGETGSGKTTQIPQWCVEYSRSVGKRGVACTQ
PRRVAAMSVAQRVSEEMDVCLGQEVGYSIRFEDCSSAKTLLKYMTDGMLLREGMSDPMLE
NYQVILLDEAHERTLATDILMGVLKEVAKQRSDLKLVIMSATLDAGKFQQYFDNAPLMNV
PGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEVAGDVLLFLTGQEEIEEACKRIKRE
IDNLGPDVGELKCIPLYSTLPPNLQQRIFEPAPPNKPNGAIGRKVVVSTNIAETSLTIDG
VVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKN
EMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD
GNLTDLGSVMAELPLDPQLAKLLISSCTLNCSNEILSITAMLSVPQCFVRPNEAKKAADD
AKMRFAHIDGDHLTLLNVYHAFKQNAEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFN
LKRTSTDFTSKDYYINIRKALVTGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHKPE
WVVYNEFVLTTKNYIRTVTDIKPEWLLKLAPQYYDLQNFPQCEAKRQLEILQAKMETRQY
QEGF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggctaagagaagaatagaagtaattgatccatacgtaacgaagaaacgcagcactgag
ggatcctcagaacaattattaaggcccatgattccagccgttattcctcagactacacag
aaaaatctgcaggtcaatccattcaccggtttgccttacacacccaggtaccatgaattt
cttcgaaagcgaataacacttccagtttttgagtatagagaggagttcatgaaattattg
gctgagcaccaatgtatcgtgttggtaggagagactggatctgggaaaaccacacaaatt
ccacaatggtgtgtagaatattctcggtcagtgggcaagagaggcgtggcctgcactcag
ccgagacgagtagcagcaatgtccgtggctcagagagtctcggaggagatggacgtctgt
cttggccaagaagttggatacagcattcgatttgaggactgctcctcggctaaaactttg
ctaaagtacatgactgacggtatgttgctgcgagaaggcatgtcagacccgatgttggaa
aactatcaggtgatcctgctggacgaggcccacgaaagaacactagctacagatatcctc
atgggcgtactgaaggaagtggccaagcagaggtcagatttgaagctggtcatcatgtct
gctactcttgatgcaggcaaattccagcaatactttgacaatgcaccactgatgaatgtg
cctggccgaacacacccggtggagatattctacacgcccgagccagagagggactatctg
gaggctgctatccgtaccgtcatacagatccacatgtgcgaggaggtggccggtgacgtc
ctgctcttcctcactggccaggaggaaatagaagaggcgtgcaagaggatcaaaagagag
atcgacaacctcggaccagatgtcggagaacttaaatgtatacccttgtactcgaccctg
ccacccaacctgcaacagcgtatcttcgagcccgcacctcccaacaagcccaatggcgcc
attggccgcaaggtggtggtcagcaccaacatcgccgagacatccctcaccatcgacggt
gtggtgtttgtcatagacccaggctttgccaagcagaaggtgtacaacccccgtatccgt
gtggagtcgttgttggtgtcccccatcagtaaggcctcagcacagcagagagcaggtcga
gccggacgtaccagacccggaaaatgtttcaggttatacactgagaaagcgtacaaaaat
gagatgcaagaaaacacatatcctgagattctgcggtcaaatctgggttctgttgttctg
caactgaaaaagctgggcattgacgatctggtccattttgacttcatggatcccccagct
cctgaaacgctgatgcgagctctagagctgctcaactacctggcggccttggacgatgac
gggaacctgacagacctgggctcagtcatggccgaactgccgctggacccacagttggcc
aaactgctcatctccagctgtactctcaactgttccaatgagattctgtccattaccgcc
atgttgtcagtcccgcagtgcttcgtccgacccaatgaggccaagaaagccgcagacgac
gccaagatgcggttcgcccacatagacggcgaccacctgacactcctcaacgtctatcac
gccttcaaacagaatgcggaagatccacagtggtgctatgataactttgtcaactaccgt
tcgctcaaatctggggacaacgtgaggcagcaactgtcacggatcatggacagattcaac
ctgaaacgcacatccacagacttcacttccaaagactactacatcaacatccgcaaggca
ctcgttacagggttcttcatgcaggtggcacacctggagcggacaggtcactacctgaca
atcaaagacaaccaggtggtccagctgcacccttccacgtgtctggaccacaagccggag
tgggtggtttacaacgagtttgtgctgaccaccaaaaactacatccgcactgtcacagac
atcaagcccgagtggttgctcaagctggcaccgcagtactatgacctccagaacttcccc
cagtgtgaggccaagcgtcagctggagatattacaagccaaaatggagacccgccaatat
caagagggattttga
DBGET
integrated database retrieval system
