Homalodisca vitripennis (glassy-winged sharpshooter): 124353206
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Entry
124353206 CDS
T09217
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03008
Ribosome biogenesis in eukaryotes
hvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124353206
09123 Folding, sorting and degradation
03018 RNA degradation
124353206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvi03021
]
124353206
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124353206
03009 Ribosome biogenesis [BR:
hvi03009
]
124353206
03016 Transfer RNA biogenesis [BR:
hvi03016
]
124353206
Transcription machinery [BR:
hvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124353206
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
124353206
Ribosome biogenesis [BR:
hvi03009
]
Eukaryotic type
Pre-60S particles
RNases
124353206
Transfer RNA biogenesis [BR:
hvi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124353206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
124353206
NCBI-ProteinID:
XP_046659057
LinkDB
All DBs
Position
1:complement(238635287..238705443)
Genome browser
AA seq
1051 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVNCIEEKNTQLDGTFIPVDSSQPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETVEKIQEIARVRKEMSARGLILPPEKAKEAHFDSNCITPGTPFMARLSNCLHYYIH
DRLNNDPGWRNIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHCLCGADADLIML
GLATHEPNFTIIREEFKPNKPKTCDICGQEGHEMKDCIGLTNEVSDPGKPITMGEEQQFI
FVRLNVLREYLERELEMPGLPFEYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAIDR
LVNLYKKTVTKTGGFITDSGNVTLDRVQLIMTDLGDVEDEIFKNRQQTELMFKQRDKMRK
RREKQQNMRHNFQGPWAPQPVGQNVGPMYQPRQEAYHQRVQHMHSQSAAGSYNSPPNQSN
RGQKRTHDDVDEGSEEEEGVNDEVRLWESGFKDRYYESKFDVGSDNLAFRYKVALEYVKG
LCWVLKYYYQGCPSWKWYFPYHYAPFASDFINIGSLDTDFEMGTQPFKPLEQLMGVFPAA
SSAHVPAPWAHLMSDPDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVEEERLFKALEPF
YRDLTPAEIRRNVRGDDRLYMNQAHTCYSFLMDITMNEANFSNETSLAADGMRGSILISE
DKVKEGGSLPSPVEGLSVIRMNAVMCVRFRDPKYPDSFIFPAKRLSGAIEPPRVLKPGNL
SREDSNNWRPQTGFVRSNQRGSLNAAGHRMLGRYSGRFGGGRGGSQDSSPGVYSSVPPPP
NGFRGQPYRQDDYQGPSRNRGNRDGRYQPFQRNSGGFNSSNSSRGSYNSPSSGRDSWSSG
GSGTHIRFSDGSDRSSGGGQTNEGGSWSTSQSSRGGRGGDNRSQSSYSSGRGSSKYGGAV
TYTSSNRGGGSGGYSSSRGGYSSGQGGYSSSRGGYSSGQGGYSNNQGSYSSGQSSYSSSQ
GNPSGQRSKGYGQQNLYPPAPGYSTSSYGRR
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcctttttcaggtggctaagcagaaaatacccatcagttatagtcaac
tgcattgaggagaagaacacacaactcgatggaactttcataccagttgactcttctcaa
ccgaatccaaatggagtggaatttgacaatctatatttggacatgaatggaataatccat
ccttgcactcatccggaagataaaccagctccaaaaaatgaagatgaaatgatggtcgct
atttttgagtgtattgaccgacttttccgtattgttcggcccagaaaattactgtacatg
gcaattgatggggtggctccaagggctaaaatgaaccaacagcgatcaagacgttttcga
gcttcaaaagaaacagttgagaagattcaagagatagctcgtgtgaggaaggagatgtca
gccagagggctgattctgccccctgaaaaagcaaaggaagctcattttgatagcaactgt
attacaccaggcacaccatttatggcacggttgtctaattgcctccactactacattcat
gacagactgaacaatgacccaggctggagaaacatcaaagtcatcctctcagacgctaac
gtgccaggggaaggtgaacacaagattatggactacattcggagacaacgagcccaaccc
gatcacgaccccaacactcagcactgtttgtgtggggctgatgctgacctgatcatgttg
ggcctggctacccatgagcccaactttaccatcatcagggaggagttcaagcccaacaag
ccgaagacatgtgacatctgtggtcaagaaggccatgaaatgaaggactgcatcggcctg
acaaacgaggtgagtgacccaggaaaaccgatcacgatgggtgaggagcaacagtttatc
ttcgtgagactcaacgtgctcagagaatatctggagagggagctagagatgccaggactg
ccgtttgaatatgactttgagcgagccgttgacgactgggtctttatgtgcttctttgtt
ggcaatgattttctgcctcacctgccgtcgttggaaatccgggaaggtgccattgaccgg
ctcgttaacctgtacaagaagaccgtcacgaaaactggggggtttatcactgacagcggc
aacgttacgctggaccgtgtacagctgattatgacagatctgggtgacgtggaggatgag
atcttcaagaatcgacaacagacggagcttatgttcaagcagcgggacaagatgaggaag
cgtcgagagaaacagcaaaacatgagacacaacttccaaggtccatgggcaccacagccg
gtaggacagaacgtcggcccgatgtaccagccgaggcaggaggcatatcaccagagagtg
cagcacatgcactcccagtcggccgcaggtagttacaactctccaccgaaccagagcaat
cggggacagaagagaactcatgatgatgtggatgaggggagcgaggaggaggagggggtg
aatgatgaggtgagactgtgggagagcggtttcaaggaccgatactacgagtccaagttc
gacgtgggatccgacaacctggctttccggtacaaggtggcgttggagtacgtcaagggc
ctttgctgggtcctcaaatattactatcagggctgtccctcatggaagtggtacttcccc
taccactacgctcccttcgcctcggactttatcaacatcggcagtctcgacaccgacttt
gaaatgggaactcaaccttttaagcctctggaacagctgatgggtgtgtttccggcagcg
agctccgcccacgtgcctgcgccatgggcccacctgatgagcgacccggactcgcccata
attgatttttatcctgaagatttcaaaattgacctgaacggaaagaagttcgcctggcaa
ggtgtagcgttgctgccatttgtggaagaagaaagactgttcaaggctttggaacccttc
tatagggatctcacacctgcagaaatcaggcgtaacgtgcgaggagatgaccgcttgtac
atgaaccaggcccacacctgctactcgttcctgatggacatcaccatgaatgaggccaac
ttcagcaatgagacgtcgctggctgccgacggcatgagaggctctatccttatctctgag
gacaaggtcaaggagggagggtcactaccatctccagtggaaggtctgtcagtgattcgg
atgaatgctgtcatgtgtgtgcggttcagggatcccaagtacccggattccttcatcttt
ccggccaagaggctatctggagcaatagagcctccacgagtgctgaagcctgggaacctg
agccgggaagacagcaacaactggagacctcagactgggtttgtgaggtcgaaccagcga
gggtctctgaacgctgccggccacaggatgctagggagatacagtggacgttttggtgga
ggcaggggtggatcccaggactcctcaccaggggtgtattcttcagtacctccccctccc
aatggctttcgtggacaaccttacaggcaggatgattaccaaggccccagccgtaaccgt
ggcaacagagatgggcgataccagcctttccagaggaattcgggtgggtttaacagttcc
aactcgtccagaggaagttacaactctccgtcgtcgggcagagacagttggagcagtgga
gggagtggtacccatatccggtttagtgatggcagtgataggagcagtggtgggggtcaa
acaaatgaagggggctcctggtctaccagtcagagtagtaggggtggcagaggtggtgat
aacagaagtcagagcagttatagtagtggtcgcggcagtagcaagtacggaggtgctgtg
acctacaccagtagcaatcgaggaggtggatctggaggctactcgagtagtcgcggtggc
tactctagtggtcagggtggctactcgagtagtcgcggtggctactcaagtggtcaaggt
ggttactcaaataatcaaggcagctactctagtggtcaaagcagttactctagtagtcaa
ggcaatccaagtggtcaacgtagtaaggggtacggacaacagaatctgtaccctccagcc
cccggctacagtaccagcagttatggccggagataa
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integrated database retrieval system
