Homalodisca vitripennis (glassy-winged sharpshooter): 124353586
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Entry
124353586 CDS
T09217
Name
(RefSeq) collagen alpha-2(IX) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hvi04147
]
124353586
00535 Proteoglycans [BR:
hvi00535
]
124353586
00536 Glycosaminoglycan binding proteins [BR:
hvi00536
]
124353586
Exosome [BR:
hvi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124353586
Proteoglycans [BR:
hvi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124353586
Glycosaminoglycan binding proteins [BR:
hvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124353586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
124353586
NCBI-ProteinID:
XP_046659448
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All DBs
Position
2:15542027..15665341
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AA seq
994 aa
AA seq
DB search
MAIVISARSKIVATVIVTSVGLAITGLFGTSAGWFQTASEDSMPLPYRHLHGNNRQGNKI
DQEESGEIFGPGEDDGSGKVETYPPVLTLPGGDYGLDAGRSLRGEKGERGPRGPPGESIR
GPPGPPGPPGPPFSGGRSAFGGDFSGSGDDGGFGSNMFGIGDGLTGPPGPPGICSCNLTQ
MLNTFSHPDIIPGPPGVPGIDGKAGPPGVPGIPGSTGERGAPGPVGEKGDRGDVGPRGPE
GIQGTKGEPGLPGFPGTPGTPGPPGPPGPSEFSNLDPSWKPRSMFKETLMGAGFDSSVGR
PGTPGPKGEPGIDGSAGLKGDRGYPGDKGERGEGGAKGQKGERGHQGPPGTQGFKGEPGT
PGTEGRQGMPGENGRPASKGEKGESGAPGPPGPPGLPPPSLDLDFTSSGLGSTAEFGMKG
EPGPKGEKGETGSKGDKGDLGPSGTSGLPGPLGSPGPAGEKGEPGSQGQPGTTGSPGTKG
EKGERGLPGSTMVTGDDGDFIAVKGEKGERGKRGRRGKPGPPGPMGPPGKSGPMGDIGMP
GFTNRDGLPGRPGFPGEGVPGPKGDKGEPGQFLDLLVKGEKGDPGINGRPGPPGPPGSPA
TGSNTQYLPVPGPPGPPGPPGPPGSPGVGVIGQKGEPGPAGPPGGRHVYGEAVHSASGRQ
GHRGSLDELKALNNFHGTNKDKYDSPSNNFRTPEETETLKIVPGAVTFKTLQDMAKMTMM
TPVGTLAYLIQEEALLVRVNNGWQYIALSTLVPISTEPSPPPSPPEHFRPPFESSNLVYS
QPLPMDSPVVNVMHPRMLRMAALNEPYSGGLKGMRGADYACYKQARRSGLSGTFRAFLSS
RVQDLDSIVRSSDRDLPVVNIKGDVLFSSWKDIFNGDGGYISQPPRIYSFSGKNIFTDIA
WPQKYVWHGSFLTGERAVELYCDAWESAGHGRLGLASSLLSGRLLAQETFSCNHSFAVLC
VEAASTSRRRRRAVEDHELTVDQYYELLSDLTTD
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggcgatagtgatctccgcccgttccaagatagtggcgaccgtgatagtgaccagtgta
ggcttggcgatcacgggcctcttcggcacctctgcgggatggttccagacagcgtcggag
gactctatgccactgccttatcgccatctccacggcaacaaccgccaaggaaataagatt
gatcaagaagagagtggtgaaatattcgggcctggggaggatgatggtagcgggaaagtg
gagacttacccacctgtgttaactcttcctggaggtgattacggtttagacgcgggcaga
agcttaagaggagagaagggagaacgaggacctagaggacccccaggagagtcaataaga
ggtcctccaggacctcctggacccccgggaccaccgttttctggaggaagatctgctttt
ggtggagacttcagtggatcaggagatgatgggggatttgggtctaacatgttcggcatc
ggtgacgggttgacgggtccccctggacctccagggatctgctcctgtaacctgacccag
atgctcaacactttcagtcacccggatatcatccccggacccccgggagttcctggaatc
gacggcaaggcaggcccccctggagtgccgggaatccctggatcaacaggagagagggga
gctcctggacctgttggcgagaaaggggataggggggatgtggggcccaggggtcctgag
ggaattcaaggaacgaaaggagaaccagggctccccggctttcctggaactcctggcact
cccggtcccccgggccctccaggaccttcagagttctccaacctagatccgagctggaag
ccccgatcgatgttcaaggagacattgatgggagcaggattcgactcctcagtggggaga
ccaggtactccgggacctaagggagagccagggatagatggctctgcaggactaaaggga
gatagaggatatcctggagataagggagagagaggagaaggcggagctaaaggacaaaaa
ggagaacgaggacaccaaggacctcctggaactcaaggattcaaaggagaaccaggaact
ccaggaactgaaggaagacaaggaatgccaggagagaatgggagacctgccagcaaaggc
gaaaaaggagagtcaggggcgcctggtcctccaggacctcctggattaccccctcctagt
cttgacttggatttcacctcttccggacttggctctaccgctgagttcgggatgaaggga
gagccagggcctaagggagagaagggagagaccggatccaagggagataagggcgatctg
ggacctagcgggacatccggactgcccggacccctgggatctccgggtcccgcaggagag
aagggggagccgggaagccaagggcagccagggactacgggatcaccaggaacaaaaggc
gagaagggagaaagaggcctgcctggctcaactatggtaacgggagacgatggtgatttc
attgcagtcaagggtgagaagggggagcgcggcaagagggggaggagaggcaagccgggg
cctcctggtccgatgggtccacccggaaaatctggaccaatgggggatattggaatgccc
ggttttacgaatagagatggtttaccgggaagaccaggattccctggcgagggggttcca
ggaccgaaaggtgacaaaggggagcctggccagttcctagatttgttggtgaaaggagag
aaaggtgatccaggaatcaacgggagacccggaccccccggaccccccggatcacccgct
actggtagtaacactcagtatctcccagtaccagggccacccggtccccccggaccacca
ggaccaccgggctcaccaggagttggagtgattggacagaaaggagagccaggtcctgca
ggtcctccaggtggaagacacgtgtacggagaggcagtgcacagcgcttctggtagacaa
ggtcaccgaggaagtctggacgagctaaaagccctaaacaactttcatggaactaataaa
gataaatatgacagtccgtcaaataacttcagaacaccggaagagacggaaacattgaag
atagttccaggtgcagtgacatttaaaacgctacaggatatggctaagatgaccatgatg
actcctgtgggaacactcgcctacttgatacaagaagaagcgttgcttgtgcgtgtcaac
aatggatggcagtatatcgcgttgtctacattggttcctatcagtacagagccttcaccg
cccccctcacctcccgagcattttagaccccccttcgagtcttccaacttagtctacagc
caacctcttcccatggacagccctgtcgtcaatgtgatgcaccctaggatgttgagaatg
gctgccctgaacgagccctacagtggagggttgaagggtatgagaggggcagactacgcg
tgctacaagcaggccaggaggtcaggtctgtcaggcaccttccgagccttcctctcctcc
agggtgcaggatctggactccatcgtacgttcttcggacagagacctcccagtcgtcaac
atcaagggcgacgtcttgttcagttcatggaaggatatcttcaatggagacggggggtac
atatcgcaaccaccgagaatatactccttcagtggcaagaatatattcacagacattgcc
tggcctcaaaagtacgtctggcacggatctttcctaacgggagagagggccgtcgaactt
tactgtgacgcctgggagtctgccggtcacgggcggcttggcctcgcctcctctctgctc
agcggccgactcctggcccaggagacgttctcctgcaaccactccttcgccgtcctctgc
gtggaggccgccagcacctccaggagacggcggcgagctgtagaggatcatgagctgacg
gtcgaccagtactatgaactgttatcagatctcactacggactga
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