Homalodisca vitripennis (glassy-winged sharpshooter): 124354333
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Entry
124354333 CDS
T09217
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvi03041
]
124354333
Enzymes [BR:
hvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124354333
Spliceosome [BR:
hvi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124354333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
Ank_2
Ank
R3H
DEAD
Ank_4
MATH
HA2_N
Ank_3
nSTAND3
AAA_19
Ank_5
AAA_22
ATPase
ANK_LRRK2
NACHT
MATH_2
BTB
PhoH
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
124354333
NCBI-ProteinID:
XP_046660660
LinkDB
All DBs
Position
1:complement(189326567..189423845)
Genome browser
AA seq
1584 aa
AA seq
DB search
MAQKRYKKDGKVYDIVPDESQYLINLTLKRFVNNPDIKEFEYISAFESCERAYVHEKAKE
LGLKSKSRGKGLNRAVTVYKRDGSTIIQADAVIPLVRPSRQAILTLLASHPVTNKERQDL
LPITERDRSFPPEASLRETNKNQCRLHNGVPIVPPSGVNNELLQFCKTLTIWPTNVSNQL
RETNKNQCRLHNGVPIVPPSGVNNELLQFRKTLTIWPMKDTIIQAINSHSVVIINGETGC
GKTTQVPQFIMDHSEKTQRGCRIICSMPRRISAVTVSERVAMERGEPLGKTVGYQIRLES
RISPNTILTYCTNGILLRTLLCGDSLLATVTHVIIDEIHERDRLSDFMLIVLRDALAKYR
GLKLVLMSSSLDTQMFSKYFTNCPVISGNTCPIITVPGRLYEVQEFFLEDILKKTGYMTK
EMVKVKKDIERVKQNKLDLKNWISALNVNGSSNQQSLTYTATPILGQQSVEVSQEIVELE
GYLKQDMDRCLAQAWASGTEQAFTQLLQLILSENISVDYQHSDTGLTALMAAAARGSVDM
AEHLLSLGAKVNIKAGSDERTALDWATENGHQDVVELLQVYMIYYEYEPCKPDVEVELSE
ESKLLIDVYERCFDEEQVDVDLIIHILSTIHESGKKGAVLIFLPGYDHIVSVKDRILANE
KKFNEYGKLAMFILHSKMQVVDQKRIFQPVHTGQRKVILSTNIAETSITIDDVMYVIDSG
KVREKSYNAVTNVYTQKCEWISQACARQRRGRAGRSQPGVCYHLFSSRRYRAMPPSQTPE
ILREPLQELCLHTKLLAPPNSPIADFLARAIEPPSPLVTRNAVQLLKTMDALDAWEDLTD
LGRHLLEISIEPKFGKMLLYAIILKCLDPILTIVCCLSHGDLFKMPTKPVLKRNALNERK
KLANNSFSDHMVYLRVFQGWQHARYSNSERYFCERHAVSGASLELITSQRAQVLGQLRAC
GLVKTRGAGDIRDVNTNSDNWAVVKAALTGGLYPNLARVDREFNVLRTQKEHKVMFHPWS
VLREVSKSARVSVAATHTSTVRGLPTDWVVYEELHRVGRLGHVRTCTVVSPLTVGIFAGP
TRLPLDAMEDSDHPSLESTVFDSDSENESDTVPEGHNAIVKLDDWLVFRLDNEAASLVHQ
LRLKWHTLLFKRLKNSSKPWTPGDEAIVNTLVSVLSAEEQALGLEQPQGVGQRPRPLNID
CYPQVRRPWEEFDGNQMAEDGNAFLSTIENSGSRFMNHHRYPDSSPTKTNQDQESGQTQR
IGAKKIFLCAHSEPLRHMLEDSELAEQNDVRVVDIEPLKYICNSTFSRSESDILQKSYCY
IIDNFEPVGTYRTFQKFTWNGFSWKCRVGKHENYLSAHLCCEGNSENTSWEIPVTVEMMF
INQEDQSKIKMSTGGPSSPMAQNTSGIRANESNTRYFVIKAGHLKTVDASVNRGVWAFTH
NTEKKLVEAFKAGKTVILVFSLQSSGHFQGYARLRGDKCESGEPLPEQGGNLNCVLPVEW
IKRGNISFNATRHLVNPYNENNKVQTSRDGQEIEPSVGDALCKMWDSPGTLWTNKTPLHQ
NHQSGFPGRPIRGRPHYNSHYYRK
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaaaagatacaaaaaggacggcaaagtttatgatattgttcctgatgaatca
caatatttgataaatctaactttgaagaggtttgtcaataaccctgatataaaagagttt
gaatatatatcagcatttgagtcctgcgaacgggcctatgttcatgagaaagctaaggaa
cttggcttgaagtcgaaaagtcgagggaaagggctgaacagggcagtgacagtgtacaag
cgagatggctccaccataatccaagcagatgcagtgatcccactggtgagaccatcacga
caagctatcctcactctccttgcatcacatcctgtcaccaacaaggaacgacaggatttg
cttcccatcactgaaagagacaggtccttcccacctgaggcttctttgagagagaccaac
aagaaccagtgtcggctacacaatggtgtacccatagtgccaccaagtggagtcaacaat
gaactgctacagttttgcaagactctgaccatctggcccacgaacgtctcaaatcaattg
agagagaccaacaagaaccagtgtcggctacacaatggtgtacccatagtgccaccaagt
ggagtcaacaatgaactgctacagtttcgcaagactctgaccatctggccaatgaaagac
accataatccaggccataaactcacactctgttgtcatcatcaatggagaaacaggctgc
ggcaaaaccactcaggttccgcagttcataatggaccactcggagaagactcagcgaggc
tgcaggatcatctgtagcatgccacgtcgcatctccgccgtgactgtgagtgagagagtg
gcaatggagcgcggagagccgctcggcaagactgttggctaccagatccgtctggagagc
agaatctctccgaacacaatcctgacgtactgcaccaatgggattctgctgcgtacatta
ctctgtggtgactcactgctggctactgtgacccatgtcatcatcgacgagattcatgaa
cgtgaccgactcagtgacttcatgctgattgtgctgcgtgatgcactcgccaagtatcgt
ggtctaaagctcgtgctcatgtcatcctctctggatacacagatgttctccaagtacttc
actaattgcccagtcatctcgggaaacacttgtcccatcatcactgtaccaggaagattg
tatgaagttcaagaattcttcctggaggatatcttaaagaaaaccggatatatgacaaaa
gaaatggtgaaagtgaagaaagacatagagcgggtgaaacaaaacaagttggatctaaag
aactggatatcagccctaaatgtaaacgggagctccaaccaacaaagcttgacctacaca
gcaacgcccatccttggtcagcagtcagtagaggtgagccaagaaatagtggagttggag
gggtatttgaaacaagatatggacagatgcttggcccaagcttgggcttcaggcacagaa
caggctttcacacaactgttgcagttgattctttctgagaacatttctgtggactatcag
cactcggacacagggctgacagcgttgatggctgcagcagccagaggtagtgtagacatg
gccgagcacttgctgtctctgggagccaaagtcaacatcaaggccggctctgacgagagg
actgctctcgactgggcgacagagaatggtcaccaggacgtggtggagttgctgcaagtt
tacatgatatattatgagtacgagccatgcaaacctgatgtagaagtcgaattatcagaa
gagtctaaattgttgattgatgtgtacgagcgatgtttcgacgaggagcaagttgatgtg
gacctcataattcacattttgagtaccatccatgagagcggaaagaaaggtgcagttttg
atctttctacctggatatgatcacatagtcagcgtcaaggacaggattttggccaatgaa
aaaaagtttaatgagtatggaaaacttgctatgtttattttacactcaaaaatgcaggtt
gtagaccaaaagaggattttccagccggtgcacacaggccagcgcaaagtgatcctgtcc
acaaacatagcagagactagcatcaccatagacgatgtcatgtatgtcattgattcagga
aaagttagagagaagagctacaatgcagtaaccaatgtctacacacaaaagtgtgaatgg
atctcacaagcctgtgcgcgacagaggaggggtcgtgccggtcggtctcagcccggcgta
tgttaccacttgttctctagccggcgttaccgggctatgccgccaagccagacacctgag
atactacgtgaaccactacaggaactttgtttacacactaagctgctggctccccccaac
agtccaatagctgactttctggcacgtgccatagagcctccttctcctctagtgacaaga
aacgctgttcagctgcttaagacaatggatgcattggatgcctgggaagacttgacagat
ctcggacgccacctgttagagatctctattgaacccaaatttggcaaaatgctgctgtat
gccattatactgaagtgtttggaccctattctaactattgtctgttgtctgtcacatggt
gacttgtttaaaatgccaaccaagccagttttgaagagaaatgcactaaacgagcgcaag
aagcttgctaacaactcatttagtgaccacatggtgtatcttcgggtatttcagggatgg
caacacgcacggtacagcaatagtgagcgatacttctgtgagcgtcacgcagtgagtgga
gccagtctagaactgataacaagccagcgtgcgcaggtgctggggcaactgcgtgcatgt
gggctggtcaagacacgtggtgcgggcgacatacgtgacgtcaataccaactcagacaac
tgggctgtggtgaaggcagctctgactggaggactatatcccaacctcgccagagtggac
agagagttcaacgttctccgcactcagaaagaacacaaggtgatgttccacccatggtca
gttctgcgtgaggtgagcaagagtgcacgagtgagtgtagcggccacccacacgtctaca
gtacgtggcctgccgactgactgggtggtatacgaagaactacatcgtgtgggcagactc
gggcatgtccggacctgtactgttgtgtcacccctcactgtcggcatcttcgcaggtccc
acccgtctgcccctcgatgcaatggaggactccgaccatccatcactagagagcacggta
tttgactcagacagtgagaacgagagtgacacagtgcctgagggccacaatgccatcgtg
aagctggacgactggcttgtgtttcgattggacaatgaggctgcttcgctcgttcatcag
ctgaggctcaagtggcacactctgttgttcaaacgtcttaagaactcgagcaaaccttgg
acaccaggtgatgaagctattgtcaacacgctagtcagtgtgctcagtgcagaggagcag
gctctagggttggagcagccccaaggagtgggtcagaggccacgccctctcaacattgac
tgctaccctcaagtaagaagaccatgggaagaatttgatggcaaccaaatggctgaagat
gggaatgcctttctatctactattgaaaactctggttctcgcttcatgaaccaccacaga
tatccagattcctcaccaactaaaactaatcaagaccaagaatccggacagactcaaaga
atcggagcaaagaaaatctttttatgtgcacacagtgagcctctacgacacatgctggaa
gacagtgagttggccgaacagaatgatgtcagggttgtggatattgagcctttaaagtac
atttgtaactctacattttctagatctgagagtgacatcttacaaaaatcatattgttat
attatagataactttgaacctgtaggtacttacagaacttttcaaaagttcacatggaac
ggtttttcttggaaatgtcgtgttgggaagcatgaaaattacttatcggcacatctgtgt
tgtgaaggaaactctgaaaacacgtcttgggagattcctgtcactgttgaaatgatgttc
atcaaccaagaagaccaatcaaaaatcaaaatgtctacaggaggaccctcatcaccaatg
gctcaaaatacttctggaatacgtgcaaatgaaagcaacaccagatattttgtcatcaaa
gctggacacctgaagactgttgacgcttcagtcaatcgaggagtttgggcatttactcac
aacacggagaagaaattagtggaagcatttaaggctggcaagacggtgatactggtgttc
tccctgcaaagttcgggtcactttcaagggtatgcacgattgcgaggggataagtgtgag
agtggggaaccactacctgagcagggcgggaatctcaactgtgtgttgcctgtagaatgg
atcaagcgcggaaacatctcgtttaacgctacccgtcatctggtgaacccctacaacgag
aacaataaagttcagactagcagagatggccaggaaatagaacccagtgtaggggatgct
ctctgcaagatgtgggatagtcccggaaccttgtggaccaacaagacccccctccaccag
aaccaccagagtgggtttcctggccgacctatcagaggccgtccacactataactcgcac
tactaccgcaagtga
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integrated database retrieval system
