Homalodisca vitripennis (glassy-winged sharpshooter): 124355037
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Entry
124355037 CDS
T09217
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-B
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124355037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124355037
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124355037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_14
TPR_12
TPR_2
TPR_19
TPR_4
ARM_TT21
TPR_10
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
124355037
NCBI-ProteinID:
XP_046661900
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Position
2:complement(171843400..171877651)
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AA seq
665 aa
AA seq
DB search
MAEKEGQSGDKGNNNNDQTSQISDQERDLAQTALAEFNKGNYNACLQNLSKLESCRPNDV
KVVHNRAVAEYYRSELKKTDLFRKNLNQVCQQAHVNTDDLDSLEDVEHCVLYYNQAVILY
HLQQHHAALRIMNKVFVFIEPMEEGLAHRVCLLLIELHLSTQQPEKALSLIAYIENQFVS
TDNATKMIGDKELKNLEKEHQERAPVTLDAATDAFRLKLLQYRARCYLSTCALKACKREI
KSIITSANPVTSNLAPVFLKGNLEYLRGNYKKSIKVLTSIPLNNSLNIFKESGESPSVLF
YNNMGCLHHYMAKPNLAAFYLQKALQENGVALNAFPKPEQGEMLSGRPLFCVGGSKAPSL
MYNLGVALLHGGKPTQAFDCLIEAVQVYHTNPRLWLRLAECCIMAHKQSNAGSFDFSARR
KDLIQGVIAGGVHRKIILNPNIWKDSKYSCEAQSYAIPMVSLEFSSLCLRNALLLLPTTG
GEGGPPVMAPPSPPVDPRQVPYLRACVLAASAYVALCLGDPVIALEHAKALLVQTNLSGV
HKLLGRLYAGEAYVLLDRVGQAVEMLSPESVADIVDPCIRPLRPWFPQSTNTARAVLQYN
LAVALALRGELDKAGDMLKQVWKSKSPTCDVPIHVIALALYIELLLGHTDIARNIIKQNC
PQLQR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaggaaggacagtcaggtgataagggaaacaacaacaatgaccagacaagc
cagatatccgatcaagagcgagatctagcacagactgcactagctgaattcaacaaaggc
aattataacgcctgcctccagaatctgagtaaactggaatcgtgccggccaaatgatgtt
aaagtagtacacaacagagccgtggctgaatactacagaagtgaactaaagaagactgat
ctcttcagaaagaacttgaaccaagtgtgtcagcaggcacatgtgaatactgatgatcta
gacagcctagaagatgtagaacattgtgttctgtactacaaccaagctgttatactctac
cacctccaacagcaccatgcagctcttagaattatgaacaaggtgtttgtgttcattgaa
cctatggaggaagggctggcacaccgtgtgtgtctgttgctgatagagctacacctcagc
acccagcagccagagaaagctctgtcactgatagcttacattgagaaccagtttgtatcc
acagacaatgccaccaagatgattggagacaaggaactcaagaatctggaaaaggaacac
caggagagggcgccagtaacattggatgcagcaaccgatgccttcagattgaagcttctt
cagtatagagcccgttgctacctcagcacttgtgcactcaaggcctgcaagcgggaaata
aagagtatcattacgtctgcaaaccctgttacttcgaatctagccccagtctttcttaaa
ggcaacttggagtatctgagaggaaattacaagaagtcaatcaaagtgcttacttccata
cctctgaacaactccctcaacatattcaaagaatcaggagaatcaccatctgtactgttt
tataacaatatgggttgcctgcaccattacatggccaaaccaaacctggctgctttctat
ctgcagaaggctcttcaggagaacggagtagctctcaacgccttcccgaagccagaacag
ggcgagatgctgtcagggagaccactgttctgtgtgggtggcagcaaggcaccaagcctc
atgtataacctgggtgtagctctgctgcatggaggcaagcctacacaagccttcgactgt
ctcattgaggcggtgcaggtctaccacacaaaccctcggttatggctacgacttgccgag
tgttgcattatggctcacaaacagagcaatgcaggtagctttgactttagcgctcgaagg
aaagatcttattcaaggagtgattgcaggaggtgttcacaggaaaatcattttaaatcct
aacatctggaaagattctaaatacagttgtgaggcgcagtcgtatgccatcccaatggtc
agcctggagttcagctcactgtgcttgaggaatgctttgcttctgctcccgaccacagga
ggtgagggaggtccacccgtcatggctcctccctctcccccagtggacccgcgccaggtg
ccctacctgcgtgcctgtgtgctagctgcgagtgcctacgtcgcgctgtgtctcggcgac
ccggtcatcgcattggaacatgccaaagctctgctggtacaaaccaacctctctggagtg
cacaagttactggggcgactgtatgcaggtgaggcttacgtgctgctggatcgtgtgggg
caagctgtggaaatgttgagtccagagtcagtagcagacattgttgacccttgcattcgc
ccgctgcgtccctggttcccccaatcgactaatacagcccgagcagtcctgcagtataac
ctggctgtggcactggcactgcgtggtgaactcgataaggctggtgatatgctcaaacag
gtgtggaaatcaaaaagcccaacatgtgatgtcccaatacatgtcatagccctggccctg
tacatagaactgcttctgggtcatacagacatcgcaaggaacattatcaaacagaattgt
ccacaacttcagcgatga
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