Homalodisca vitripennis (glassy-winged sharpshooter): 124355129
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Entry
124355129 CDS
T09217
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124355129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124355129
03041 Spliceosome [BR:
hvi03041
]
124355129
03009 Ribosome biogenesis [BR:
hvi03009
]
124355129
03016 Transfer RNA biogenesis [BR:
hvi03016
]
124355129
Enzymes [BR:
hvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124355129
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124355129
Spliceosome [BR:
hvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124355129
Complex C
U4/U6.U5 tri-SnRNP related factors
124355129
Ribosome biogenesis [BR:
hvi03009
]
Eukaryotic type
Pre-60S particles
Helicases
124355129
Transfer RNA biogenesis [BR:
hvi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124355129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
ATPase_2
Motif
Other DBs
NCBI-GeneID:
124355129
NCBI-ProteinID:
XP_046662048
LinkDB
All DBs
Position
2:181847707..181877304
Genome browser
AA seq
1037 aa
AA seq
DB search
MADFDDELFNVFDEEIQPTKIKEESEVVSINSPPLVSNVQTTKISSSPSVKRDHSDDESS
SSKRPKPESVFEDVNVQNISHRIKVHTVETLEACLHEVAVPPDEEYVPLRVVTTKPAKEY
PFILDPFQKEAIACVDNDRSVLVSAHTSAGKTVVAEYAIARSLKEKQRVIYTTPIKALSN
QKYREFYEEFHDVGLVTGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHY
MRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFCEWVCHLHHQPCHVVYTDYRPVPL
QHFLFPAGGEGIHLIVDEKGNFKEDNFNQAMAVLANAGDLAKGDKQLRGRKGGSKTGGDT
NCFKIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTLEEKKLVDEVFNNAMDVLS
EQDRTLPQVENVKPLLRRGIGIHHGGLLPILKETIEILFAEGLIKALFATETFAMGLNMP
ARTVMFTGARKFDGKDFRFVTSGEYIQMSGRAGRRGLDDKGIVILMIDEKVSPQEGREII
QGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPQLHQKVQEQQELY
DSVMIPNESEVVSYHHIRERLNDLSKQFQEYLTRPQFLIPFLQPGRLVKVKAETEEGEEF
EWGVVVNFEKKGANERGKNPAKESAMLYVHTLLYVRSSGNGGGDDTGDTPQPCPLSSPGE
IEVVPVKHCQICQISSLRVHVPDDLTSPDKKKSVLKTIEQVVKRFPDGVPLLNPQTDMKI
NDHAFTNIVSLINTYEKRLFEHPMHENESLEDVYEQYLEKVKIGRELKQSKAELKKAMSL
LQMEELKCRKRVLRRMGYCTADDVIEMKGRVACELSSGEELLMTELIFNGVFNDLTVPQC
VALLSTFVCDEKSSENPRMSEELAGPLRQMQELARRIARVSVEAKMTVDEETYVEQFKPF
MMDVCYSWCNGASFLEICKMTDIFEGSIIRCMRRLEEILRQLVQASKNIGNTDLENKFSE
AIKLMKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttgacgatgaattatttaatgtatttgatgaagaaattcagcctacaaaa
ataaaagaagaatcagaagtggtttctatcaactcacctccacttgtttctaacgtgcaa
accactaaaatttccagcagtccctctgtaaaaagagatcattctgatgatgaatcaagt
tcttcaaagagaccgaaacctgaatcagtttttgaggacgtaaatgttcagaacatctca
cacaggataaaagtgcatacagtagaaacgctagaggcgtgtctacatgaggtggcggtg
ccacctgacgaggaatatgtgcctctccgtgtcgttacaactaaacccgccaaggagtac
ccgttcattcttgatccgttccagaaggaggcgattgcatgcgtggacaatgatcgatcg
gtgctggtttcggcccacacatctgcagggaaaacagttgtagccgagtatgctatagca
cgatctctgaaagaaaaacaacgggtgatatatactactccaatcaaggctctcagcaat
cagaaatacagagagttctatgaagaattccatgacgtgggactggttacaggggatgtc
acaatcaatccgactgccagctgtctcatcatgacaacagagattttgagaaatatgctc
tacagagggtcagaagtcatgagggaagtcggttgggtcatatttgatgagatccattat
atgagagacaaagagagaggagtggtttgggaggagacgttaatcctgctgccagacaac
gtacactatgtgtttctttcagccacgatacccaatgctagacagttctgcgagtgggta
tgtcacctgcaccaccaaccctgccacgtcgtttatacggactacaggcctgtgccatta
caacacttcctgttccctgctggcggtgagggtatccacctcatagtagacgagaaggga
aacttcaaggaagacaacttcaaccaagcaatggcagtgttagctaatgctggagatctg
gcaaaaggggacaaacaactgcgaggcagaaaaggtggtagtaaaactggaggagacaca
aattgttttaaaattgtaaaaatgatcatggaaagaaattttgctcccgttattatcttc
tcttttagtaaaaaggattgtgaattgtacgcaatgcagatggccaaactggatttcaac
actttggaagaaaagaaattggtagatgaggtgttcaacaatgccatggatgtgttgtca
gagcaagatcgtactctgcctcaagtggagaatgtgaagcccttgcttagaagaggcata
ggcatacatcatggaggtctacttccaatattgaaggaaactattgagatattgtttgct
gaaggattgataaaagcactatttgccactgaaacttttgcaatgggcttaaacatgcca
gctcgtactgtgatgttcacaggagcccggaagtttgatggaaaagacttcagatttgtg
acatcgggagaatatatccagatgtcaggacgtgcagggcggagagggttggatgacaag
gggattgtcatactgatgattgatgagaaagtaagtcctcaagaaggccgagaaatcata
caaggaaaggccgatcctatcaattctgccttccacctcacatataacatggtgctcaac
cttctcagggtggaagagataaacccggagtatatgctggaaagatctttcttccaattt
cagaatcaggctgcaattccacaactgcatcagaaggtgcaggaacaacaggaactgtac
gatagtgtgatgatacccaatgagagtgaggtagtgtcgtatcatcacatcagagaacgg
ctgaatgatctcagcaaacaattccaggagtacctgacacgtcctcagtttttaattcca
ttcctgcagcctggacgtcttgtgaaggtaaaagcggaaactgaagagggagaggaattt
gagtggggagtggttgtgaactttgaaaaaaaaggtgcaaatgaacgtggcaagaatcca
gcgaaggagagtgccatgttgtatgtccatacgctcctatacgtgcgtagtagtggcaat
ggtggtggtgatgacacgggggacacgccacagccctgcccgctcagttcaccgggagag
atagaggtggttccggtcaaacattgtcagatctgtcagatcagttcgctcagggtacac
gtacctgatgacctcacatcgcccgacaagaagaagtctgtcttgaagacgatagagcaa
gttgtaaaacggttcccggatggagtgccattactgaatcctcaaacagacatgaaaata
aacgaccatgctttcacgaatattgtgtcattgataaacacttacgagaaaaggctattt
gaacatcctatgcatgaaaatgaaagtctagaagatgtttatgaacaatacttggaaaaa
gtcaagattggcagagaactgaaacagtcaaaagcagaacttaagaaggctatgtcactt
ttacaaatggaggaacttaaatgtcggaaaagagttttgagaaggatgggttattgcaca
gcagacgatgtcattgaaatgaaaggcagagttgcttgtgagttgagcagtggtgaagaa
ttgttaatgacggagctaatttttaacggagtgtttaacgaccttacagttccccagtgt
gttgcgctgctgagtacatttgtctgtgatgagaagagttctgagaatcccaggatgtca
gaggagctggcagggcctctcagacagatgcaggagctggcgaggaggatagcccgagtc
agtgtagaagcgaagatgactgtggatgaagaaacctatgtggaacaattcaagccattc
atgatggacgtatgttacagctggtgcaatggtgcatcatttctagagatttgtaaaatg
acggacatttttgaaggtagcataattcgatgtatgagaagactagaagagattctgaga
caactagttcaagcatccaaaaacattggaaatacagatttggaaaacaaattcagtgag
gccatcaaactcatgaagagggacattgtgtttgcagccagtttatacttataa
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