Homalodisca vitripennis (glassy-winged sharpshooter): 124359361
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Entry
124359361 CDS
T09217
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03020
RNA polymerase
hvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124359361
09124 Replication and repair
03420 Nucleotide excision repair
124359361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvi03021
]
124359361
03400 DNA repair and recombination proteins [BR:
hvi03400
]
124359361
Enzymes [BR:
hvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124359361
Transcription machinery [BR:
hvi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124359361
DNA repair and recombination proteins [BR:
hvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124359361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
124359361
NCBI-ProteinID:
XP_046667997
LinkDB
All DBs
Position
4:60980690..61095977
Genome browser
AA seq
1175 aa
AA seq
DB search
MYELDEDQYEDEEAEEISSELWQEACWIVISAYFEEKGLVRQQLDSFDEFIQMSVQRIVE
DSPQIDLQAEAQHTTGEIETPPRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDITKTIVKEGEDPIESQHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE
VSIIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHVETLKERDYNNYGWQVLVSSG
VVEYIDTLEEETTMIAMTPQDLQQEKEYAYCTSYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRDLPAGINSV
VAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQG
MRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTMTLPDNEDELEGTTKRFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYG
YQLRGNEVMYNGHTGRKINAQVFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaattagacgaagatcaatatgaggatgaagaagcggaagagatttccagtgaa
ctctggcaagaagcttgctggattgttatcagcgcctattttgaggagaaaggtctggta
cgacagcagttggactcctttgatgaatttatacaaatgtcagttcaaagaatcgttgaa
gattctccacagatagacttgcaggcagaagctcagcatactactggggaaattgaaaca
ccgccccgctatttgctgaaatttgaccaaatctatttgtcaaaaccaacacattgggag
aaagatggttcaccatctcctatgatgcctaatgaagccaggctacggaacctgacatac
tcagctcctctatatgtagatattaccaaaacaattgttaaagaaggtgaagatccgata
gaatcacagcatcagaaatcctttattggaaaaattcccatcatgttgagatcaacttac
tgcttgcttagtggtctgacagatcgagatctgacagagttgaacgaatgtcctttggat
cctggcggatacttcatcataaacggctcagaaaaggtgcttattgcccaggagaaaatg
gccaccaacacagtgtatgtgttcagcatgaaggatggcaaatttgcgtataaggctgag
atccgatcttgtctggaacattcttctcggccaacctccactctctgggtcaacatgatg
gctagaggaggacagagtattaaaaagtcagcaatcggtcaacggatcatcgcaattctt
ccatacatcaaacaagagattccaattatgattgttttccgagccctgggcttcgtggct
gacagagacattttggaacacatcatttatgattttgacgatccagagatgatggaaatg
gttaagccatctttggacgaagcttttgtgatccaagagcagaatgtagctctgaacttt
attggagcaagaggagctaggcctggagtcaccaaggaaaagcgtatcaagtacgcgaga
gaaatcttgcagaaggaaatgttacctcatgttggagtgtctgatttttgtgagaccaag
aaagcttacttcttggggtacatggtacatcgactgctgctagctgcccttgggcgacga
gaactggacgaccgagatcactatggcaacaagcgtctggacttggctgggcctctgttg
gccttcctcttcagagggcttttcaaaaatctcatgaaagaagtgagaatgtacgcacaa
aagtttattgacagagggaaagacttcaatttggagcttgctattaagaccaagatcatc
actgatggcttgaggtattcattggccacaggaaactggggcgaccaaaaaaaagctcat
caggccagagctggtgtatctcaggtgttgaatcgattgacatttgcatcaacattatcc
cacttgcggcgagtaaactctcccatcggcagagatggtaaattagccaagcctcgacag
ctgcacaatacattgtggggtatgatctgccctgctgagactccagaaggagctgctgtc
gggctggtgaagaacttggctctgatggcatacatctctgtcggctcccaaccatcaccc
atccttgagttcttggaggagtggagcatggagaatcttgaggaaatagcaccgtctgcc
attgcagacgctaccaagatatttgtcaatggttgttgggttggtattcacagagatcct
gagcagttgatggggaccctgagaaagctccggagacagatggacattatcgtcagtgag
gtgtctatcattcgagatatccgagacagagagatccggatatacacagacgcaggtcgg
atatgtcgacctctacttattgttgagaatggacagctgttgctcaaaaaacgtcacgtt
gagacgctcaaggagagggactacaacaactacgggtggcaagtgctggtgtccagtggc
gtggtagaatacatcgacacattggaagaggagacaaccatgatagcgatgacaccacag
gatctgcagcaagagaaggagtatgcctactgtacatcctatactcattgtgagatccat
cccgccatgatactgggggtctgtgcctccatcatccctttccctgatcacaaccagtcg
cccaggaacacgtatcagagtgctatgggtaagcaagcaatgggtgtgtacatcaccaac
taccacgtgcggatggacacactggcgcacgtactctactatccccacaagcccctagtc
accacccgctccatggagtacctgcggttccgggacctcccggccggcatcaactccgtc
gtggccattctctgttacactggttacaaccaggaggacagtgttatcctgaacgcttcc
gctgttgaaagaggtttctttagatcagtgtttttccgatcctacaaggatgcagagtcc
aagagaatcggtgaccaggaggaacagtttgagaaacctaccagacaaacatgtcaagga
atgagaaacgcaatatatgacaagttagatgatgatggtattattgcaccaggtctgaga
gtctctggagatgatgtggttattgggaaaacaatgacactgcctgacaatgaagatgag
ctggaaggaacaacgaaacgcttcaccaagcgagacgccagcactttcttacggaacagt
gagacaggtatcgtagaccaagtgatgctgacactcaactcagagggttacaagttctgc
aagatccgtgtgagatccgtgcggataccccagattggggacaagtttgcctcccgtcac
ggacaaaagggaacctgtggtatccagtatcggcaagaggacatgccattcacatgtgag
ggtatcactccagacatcatcattaaccctcatgctatcccctctcgaatgacaattggc
catttaattgaatgccttcagggcaaagtgtcgtcgaacaaaggagagattggtgatgcc
acaccgttcaacgatgctgtcaatgtgcaaaagatctcaacacttttgcaagagtacggc
tatcagctgagaggcaacgaggttatgtacaatggacacacgggtcgtaagatcaatgct
caggtgttcattgggcccacatactaccagcgccttaagcacatggtggacgacaagata
cattcacgtgcgcgtgggcctgtacagattcttgtgcgacagcccatggagggcagagct
agggatggagggctgcggtttggagagatggaacgagattgtcagattgctcacggtgca
gcacaatttttacgtgagaggctatttgaggtgtcagatccctaccgcatccatgtatgc
aacttttgtgggcttattgctatcgccaaccttcgcaacaacaccttcgagtgcaagggc
tgcaagaacaaaactcagatttcccaagtgagacttccgtatgcagctaaacttcttttt
caagaactcatgtccatgaatatcgctccaagactgatggtcatctaa
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integrated database retrieval system
