Homalodisca vitripennis (glassy-winged sharpshooter): 124359645
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Entry
124359645 CDS
T09217
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124359645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124359645
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124359645
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
124359645
NCBI-ProteinID:
XP_046668510
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Position
4:82285588..82305403
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AA seq
465 aa
AA seq
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MADIGDDSVSEDQWLYGDSNPDQPNGNVENSEDNSKSIDPFINPDGPQGNEPQQPPGVLE
PPVFPPPTRNGETEQGDGEEGSLQIDEGQEPPGTENGEIIQPESGEFEEDDDSEDDTVNV
VIGDIRTAPQYGSSLNIKRGGLLTSTGLPPQLKQPGKFSIEEFEQIGTINGIAAHEYNLD
SLEDKPWRKPGADITDYFNYGFNEDTWRAYCERQKRMRIHESGVGLGPLSTNVTAPMTGS
GRAPVVPMDKQYMVPTGPPPSRRVTGCIDVIGGESLPTRRTTDSPPKENIIQVMTADRRE
YSRKGFPDMMVPPPGGVTVPPPGFQPGMPPPHLGSAPPGFAGTYGTDFYSAEVDPYYAYE
PTQDSQWSSSQVPDKISVKQEPMDGESSKDDERPRDRDRDRDRDRDRDRDRDRHRDRERH
RHRSRSRSTERRSRKHKSRSRSPGHRSHKKKKSKKSDRQKEENSE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcggacataggtgatgattctgtaagtgaagatcagtggttgtatggcgattctaat
cctgatcagcctaatgggaatgtggaaaatagtgaagataactccaaaagtattgatcca
tttattaaccctgacggccctcaaggaaatgagcctcagcagcctccaggagtcctggaa
cctccagtgtttcctcctccaactcgtaatggagagactgaacaaggtgatggagaagag
gggagccttcagattgatgagggacaagaacctcctggtactgaaaacggtgaaataatt
cagccagagagtggagagtttgaagaggatgatgacagtgaagacgatacagtaaatgta
gttattggggacattcgtacagcacctcaatatggtagcagtctcaacatcaaacgtggt
ggccttctcacgtccactggtctccctccacaacttaagcaaccaggcaagttctcaatt
gaagaatttgaacaaattggaacaatcaacggaatagctgctcatgaatacaacctcgac
agcttagaggataaaccatggcggaaacctggtgctgatattacagattatttcaattat
ggattcaatgaagacacatggagggcatactgtgaacgtcagaaacgaatgcgtattcac
gagtcgggtgtaggtctgggacctctgagcaccaatgtcaccgcacccatgacagggtct
ggtcgtgctccagtagtccccatggataaacagtacatggtacccacgggtcctcctcct
agccgccgagtcaccggctgcatcgatgtcataggaggcgaaagcctgcccacacgtagg
actaccgattctcctcctaaagaaaatattattcaggttatgacggcagatagaagagag
tacagtcgcaagggtttcccagatatgatggttcctccaccgggaggagtaactgttcct
cctccaggttttcaacctggaatgcctcctccacacttgggtagcgcaccacctggattt
gctggaacttatgggactgacttctattctgcagaagtggatccatattatgcttatgag
ccaactcaagattctcagtggagtagctcacaggttccagataaaatatcagtaaaacag
gagccaatggatggggaatcttccaaagatgatgaaaggcctcgggatagagatcgagac
agagatcgtgaccgggatagagacagggacagggacaggcatcgtgacagagaaagacat
agacatcgctctcgaagtcgatctactgagcgaagatcaaggaagcacaagagtaggagt
cgcagtccaggccatagaagccataagaagaagaagtccaagaaatctgatcgccaaaaa
gaagaaaatagtgaataa
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