Homalodisca vitripennis (glassy-winged sharpshooter): 124360239
Help
Entry
124360239 CDS
T09217
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124360239
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hvi00536
]
124360239
Glycosaminoglycan binding proteins [BR:
hvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124360239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
124360239
NCBI-ProteinID:
XP_046669629
LinkDB
All DBs
Position
4:complement(135531174..135611685)
Genome browser
AA seq
1655 aa
AA seq
DB search
MKPPLLLGLLAFSVTFSQDTVPEEPVDVLAALGVTVEQTGDRVILVEGRCGGPAYRLAEE
QGPMGVNTRQLFPTAFPRDFSLITSLRLAPNTSSATLLALYSDTGTEQLVFTVGDIVTLY
YQDSDSDSEQDSINSFNVTFDVNINDNTWHRLGLSVKGDSATLLVDCELTFSQPLPRNPS
GIINIDGVLFYGQQILDETYYQGDVELLMIGPVPDSAYTLCDREARDCDDTDFDDSDDTD
DTDDTYGTREDYGENGIVTESTSLAVSSVEDNYGYSEEVGSVSAGVNYAVGPPGPRGYTG
PPGPPGLPGAKGDPGRDGLAGMGGIPGPPGNVFMIPLNAQGNEKGPDSLSDMVRQMFSQH
VMALRGSEGPMGLTGVPGPEGPPGPEGPKGETGDSGEPGQRGERGPTGLTGREGRRGQPG
RDGGRGQTGPPGTKGEQGPMGLPGLPGEKGERGLPGAEGSMGLQGHDGMQGEEGPQGLPG
LPGEMGARGFTGPRGFPGMPGPPGIPGTEGPTGPKGNTGPTGQPGSPGQPGPLGPIGPPG
PSGQLGPPGPAGPMGKPGLPGLPGADGAPGLPGNPGIVGAKGDLGPAGVQGPIGFPGNRG
VKGDEGKRGLAGEKGEKGDKGMEGEKGDFGSKGEPGPVGPSGLPGLEGPEGPKGSEGPRG
ETGPPGFTGEKGKIGQPGFPGYPGGPGDKGDKGFAGKPGQRGDKGDRGIPGHHGERGESG
PRGFRGSRGRMGMEGITGPKGDTGQPGPPGPQGDRGPQGIEGPRGFIGPAGSPGANGKDG
VPGQPGERGPPGEPGPIGPAGAPGVVGPQGPTGEPGPVGEAGTPGSPGAPGDTGHPGDSG
KEGPPGPPGETGKPGPPGSPGLQGFPGERGQAGNPGITGLKGEMGPPGPPGHVGEKGQLG
EPGKEGSPGPEGRQGPQGSPGPSGSKGDRGEPGIPGSMGRDGLPGQRGLTGPAGPMGPPG
EDGDKGEMGHPGEKGFKGSQGEMGPAGTQGPQGVRGEPGSLGPSGEKGLQGEIGRQGVKG
EDGPQGVVGPAGPPGPQGLPGPPGVKGEMGDLGPKGPAGPAGSPGEPGPRGAKGVEGIQG
ALGPEGPQGKKGEAGEPGPPGPPGNDGKHGDRGPQGQKGDEGKPGIQGPPGPRGSVGPEG
AKGSAGPPGFPGSPGEPGLQGPKGVQGLEGEDGKPGEPGPPGETGPPGKMGLTGPPGKVG
VDGPAGFQGNTGLPGDKGDKGSPGPPGLTGPVGSEGQPGPPGSPGPRGSPGPAGDAGVPG
KAGTDGPPGKTGDSGPRGQKGDRGRRGMKGHRGEAGMQGLKGDLGDKGDKGGRGMVGPDG
PKGDQGPTGPMGMKGNEGIPGPVGPDGPSGPKGSEGIGGKKGEQGPPGPPGPPGPPAEMP
LLPPELLFGEGSASRFRREAGLADKEASPGRFKKRKFERKVEEHNDAGPQFIDIYSSIYA
MRQDLERVRKPVGTRENPGRTCKDLFYGHPQFTSGWYWIDPNLGMSDDAIYVFCDMSAGG
ETCIFPDVHSSQMPNIPWRKDRDESGWYSTLRGGFRITYETTGVVQMTFLRLLHETAYQN
FTYTCINSAAWLDMTTGGYDKALRLLVDNDQEFSHDSLPPNIIIDGCKTRKSKSETVFEV
RTRNLDQVPIVDFYPVDYGLPHQAFGFLVGPVCYK
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctcccttgctcctcggactcttggctttctcagttaccttctcgcaggatacc
gtcccagaggagcctgtggatgtattggcagcacttggagtgacagtagagcagaccggg
gaccgagtgatcctggtggaggggcgctgcggggggcccgcctacagactagcggaggag
cagggtcccatgggcgtcaacaccaggcagctcttccccaccgcattcccacgggacttc
tcactgataacttctttgcggttggcacctaacacttcctcggccacattgcttgctctc
tacagtgataccgggactgagcagctggtgttcacggtaggcgatatcgtcactctctac
taccaggacagcgacagcgacagcgaacaagattccattaacagcttcaacgttaccttt
gatgtgaacattaacgataacacgtggcaccgccttggcctcagtgtgaagggcgattca
gccactctgctcgtagactgtgagctgacattcagtcaaccactccccaggaacccttca
ggaatcatcaacattgacggcgtcctcttctatggccagcaaatcctggatgaaacttac
taccagggtgatgtggaactgctgatgataggaccagtccccgactcggcatataccctc
tgtgacagggaggcccgggactgtgacgataccgactttgatgactctgatgataccgat
gataccgatgatacatatggtacaagagaagactatggagagaatggcattgtcactgag
agtacatcacttgcagtttcttctgttgaggataactatggctacagtgaggaagtaggc
agcgtctccgcgggagtcaattacgcagtgggtcccccaggacctaggggatacacaggt
ccacctgggcccccaggactgccaggtgccaagggagatccgggccgggatggtctagct
ggaatgggaggtataccgggtcctccaggaaacgtctttatgattcctctaaacgcccag
ggcaatgagaaggggccagactcgctctctgacatggtgcgacaaatgttctctcaacat
gtgatggctctgcgaggcagcgaaggtccaatgggactgacaggagtgccaggacctgaa
ggacctcctggaccagaaggaccgaagggagaaacaggagatagtggtgaacctggccag
agaggtgagaggggaccgaccggactgacagggagagaaggtaggagaggacagcctggc
cgtgacggtgggagagggcagacaggaccgcctggcacaaagggtgaacagggacctatg
gggctgcctggtcttcctggtgagaagggtgagagggggttgccaggggctgaggggtcc
atgggtctgcagggccatgacgggatgcaaggagaggaaggtcctcaaggactaccagga
cttcctggagaaatgggagccagaggttttaccggtcccagaggttttccagggatgcca
ggaccaccagggattccaggaacagaaggacctaccgggcccaagggtaacacaggacct
actgggcagcctggatcaccaggacaaccaggccctctgggaccaatcggacctccagga
ccctccggacaactgggaccaccaggaccagcaggcccaatgggcaaaccaggacttcca
ggtttacccggggcagacggagctcccggacttccagggaatcctggtattgtgggagct
aaaggagacttggggccagctggagtacaagggcctataggcttcccgggaaatagagga
gtgaaaggagatgaagggaagcgtggattagctggagaaaagggggaaaagggagataaa
ggaatggaaggggagaaaggggattttggaagcaaaggagagccagggccagttggacca
tcagggcttccaggcttagagggtcctgaagggcccaagggctctgagggacccagaggg
gagactggtccaccaggcttcactggagagaaaggcaagataggtcagcctggattccct
gggtatcctggaggtccaggagacaaaggagacaagggttttgctggtaaacctggacaa
cgtggagataaaggagacagagggattcctggacatcacggggagagaggagagtctggt
cctaggggattcagaggatccagaggacgaatgggaatggagggcattacgggacctaag
ggtgacacaggtcagcctggacctcctggtccccaaggagatagaggccctcagggtata
gaaggacctcgaggtttcatcggtcctgcaggctctccaggtgccaatggaaaggatgga
gttcctggtcaaccaggggagagaggccctcctggagagcctgggccgataggacctgca
ggagcaccaggagtggtgggaccacaaggcccaacaggagagccaggacctgtaggggaa
gctgggacgcctggtagtcctggagccccgggagacactggacatcccggggacagtggc
aaggaggggccacctggacctccaggggaaactggcaaacctggaccacctggcagtcca
ggacttcagggctttcctggagagagaggccaggcaggaaacccaggtattacaggtttg
aaaggagagatgggtcctccaggcccacccggccatgttggagagaaaggacagcttgga
gagccaggaaaagaaggatccccaggaccagaaggtcgccaaggaccccaaggttctcca
ggaccaagtggaagcaaaggtgacagaggagagcctggtatacctgggtcgatggggaga
gacggtttaccaggacagagaggactgacaggacctgcaggacccatggggccacctgga
gaagacggggacaaaggagagatggggcatccaggagaaaaaggattcaaaggatctcag
ggtgaaatgggcccagcaggaactcagggacctcaaggagtacggggagagccagggagt
ttgggaccttcgggagagaaaggtttacaaggagagataggcagacaaggagttaaagga
gaagatgggcctcagggagttgtggggcctgcaggacctccaggaccccagggattacca
ggtccaccaggtgttaagggagagatgggagatctagggcctaaaggtccagcaggacca
gctggttcacctggagaacctggacccagaggggctaagggtgttgaaggcatccagggg
gcccttggacctgaaggacctcagggtaagaaaggagaagctggagaaccagggcctcct
gggcctcctggaaatgatggaaaacatggtgaccgaggaccccaaggccaaaaaggagat
gagggtaagcctggtatccaaggacccccaggaccacgtgggagtgtagggccagagggg
gctaagggaagtgcaggtcctccaggatttcctgggagcccaggagagccagggctgcag
ggacccaaaggagtccaggggttggagggagaagatgggaaaccaggagagccaggacct
ccaggagagactggccctccaggcaagatgggactcacgggacctccagggaaggtgggt
gtagacggtccagctggctttcagggcaatactgggttgccaggtgataaaggggacaag
gggagtcctggtcctccagggttaactggtcctgtaggatcggaaggacagcccgggccc
ccaggctcaccaggtcctaggggatctccaggaccagcaggagacgcaggagtgccagga
aaggcagggacagatgggcctccaggtaagacaggggactctggaccaaggggacagaaa
ggagacagaggccgaaggggaatgaaaggccacaggggagaggctggcatgcaaggactg
aagggagatctgggggataaaggagacaaaggtggcagaggaatggttggaccagatggt
cctaaaggagaccagggtcctacaggtccaatggggatgaagggaaatgagggcattcca
gggcctgttggaccagatggtccctccggacccaagggttcagaggggataggaggcaag
aagggggagcagggcccccctggaccacctgggcctcccggacctcctgcagagatgcct
ctgttaccaccagaactgttatttggagaaggttctgccagtcggttcagaagagaagcg
ggtttagcagacaaagaagcttctccaggaaggtttaagaagaggaaatttgagaggaag
gttgaagaacacaatgatgctggaccacagtttattgatatctacagctctatatatgca
atgagacaagatttggagcgtgtacgtaaacctgtcggcaccagggagaacccaggtcga
acttgcaaggacttgttctatggccatccgcagttcactagtggttggtactggattgat
cccaacctaggaatgtcagatgacgccatctacgtgttctgtgacatgtcagctggtggg
gagacatgtatctttcccgacgttcactctagtcagatgccaaacatcccgtggcgcaaa
gacagagacgagagcggatggtactccacactacgtggcggcttccggatcacatacgaa
acaacaggagtggtacagatgacattccttcgcctgctgcacgagactgcataccagaac
ttcacatacacctgtattaacagtgcagcttggctggatatgactactggcggctacgac
aaggcactgcggctgctggttgacaacgaccaagagttctcccacgactctctccctcca
aatatcattatcgatggctgcaagacaagaaaatccaaaagtgaaactgtgtttgaagtg
cggactagaaaccttgaccaagtgccgatagttgacttttatccggtggactacggtctt
cctcatcaagcttttggatttcttgtgggtccagtgtgctataaatag
DBGET
integrated database retrieval system
