Homalodisca vitripennis (glassy-winged sharpshooter): 124360475
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Entry
124360475 CDS
T09217
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124360475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvi03400
]
124360475
DNA repair and recombination proteins [BR:
hvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124360475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
124360475
NCBI-ProteinID:
XP_046670095
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All DBs
Position
4:161032948..161086023
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AA seq
1163 aa
AA seq
DB search
MSQKTLFNYFNKSITSNGSPNNTKSSPPKTPSLKRKLDNGKEKDSPKSVNGSVKKKTPVS
KKKKEEVVYKSDSEEEETKTPPEKRRRVFEIDSEGDATEDEFIPDEHDESSEDESLSEHS
ESEPDTASEDGSPVKKVRKHNPKDNKKGGTKKKSAPSVTPAKAKLQLFKPSTPSTPGNKE
NAVLDGGDSNWPHLKYDFLQPNRIKDIKMRPPSHPEYDPRTVHVPDDFKQNLTPAMRQWW
EMKAKHYDCILFFKVGKFYELYHMDAVIGATELSLLYMKGDFAHTGFPEVAYGKYAAALV
ERGHKVARVEQVETPDMMGERVKKIIKPTKFDRVVKREICQLTSKGTRVFTVQDGESVGA
DASYLLALTEKECDGGKSLYGVCFVDTSIANFHLGQFTDDKHCSRLRTLFAHYPPAQVLY
ERGQLSPRTQQVLNTSLTSAIKEHLAPESEFWSSTKTLTTLSERKYFEDGTPEGLKPFLS
DSDSLGLTASDEADLAVKALGAVTWYLSRCQLDQQLLSMGQFTTYKPVDQEVPLQEDKKS
SDVITARHMILDSTTLKNLNVLENSCGGTAGTLLSKLDHCSTPMGKRLLHQWLCSPLTGI
KSIEARQRAVTELIGQPDLVQSVRGLMTKLPDLERLLSRIFAQSSRGQNASHPDSRAIFF
EEKTHSKKKIIEFISVLNGFQAAQEIAEKFQGSGVGELSEILCQCSHFPSTNPPGKFPDL
SDHLTFFKNAFDHTEASKEGHIIPSAGVDPDYDEAVEALTLLESEQKAYLKSQCEFFKTT
LKYVGTDKKRFQLEIPEAACRKITSSDYLLQGQRKGFKRYWTSKTKEFLENQMAAEERKK
NVLHGLRKRIFSRFSERYTDWMAAVQCVSVLDVLMSFAEYSRRQEGDICIPEFQPTDTCI
QPFVKLKGGSYPCTTGDEVFIPNDTVIGDPTTRSPSLILVTGPNMGGKSTLMRQLGLLTI
MAQLGCRVPAESLKLSPVDRIFTRLGANDDIMAGESTFYVELCETSAILAHASKHSLVLI
DELGRGTSTYDGTAIAHAVLRQLTTMQCRTLFSTHYHSLVEDFKDCDNVALGHMACMAES
EMEEEGEGIQENITFLYKFAAGACPKSYGFNAARLAGVPAHIIKVGYARAKALEAECRLR
KTFQNIFLKEINVDLFKQQISAL
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaaaacgttgtttaattattttaacaaaagtataacatcaaatgggagtcca
aataatacaaaatcaagtccacccaaaacgccatccctcaaacgcaagttggataatggc
aaagaaaaagacagtccaaagtcggttaatggatctgtaaagaaaaagacaccagtgtca
aaaaagaaaaaagaagaagtcgtatacaagtccgatagtgaagaagaagaaacaaagact
cctcctgaaaagagaagacgagtttttgaaatagatagtgaaggggatgctacagaagat
gaatttataccagatgagcatgacgagagctcagaagatgaatctttatctgaacattca
gagtcagaaccagacactgcgtcagaagatggaagtccagttaaaaaagtccggaaacac
aatccaaaagacaataaaaaaggaggaaccaagaaaaaatctgctccatcagttacacca
gccaaagctaaacttcagctgttcaaaccatccacaccgtctactccaggaaacaaagag
aatgctgtcttggacggaggagatagtaactggcctcatcttaagtatgatttcctccag
ccaaacagaataaaggacataaagatgagaccgccaagccaccctgagtatgaccctaga
acagtgcatgttcctgatgatttcaaacaaaatttgactcctgccatgagacaatggtgg
gagatgaaggccaaacactatgattgtattttgttttttaaagtgggcaaattctatgag
ttgtaccatatggatgctgtcattggagctacagaattaagcttactctacatgaagggg
gattttgcccacaccggattcccagaggtagcatatgggaagtatgcagcagcgcttgtc
gagagaggacacaaagtggccagagtcgagcaggtggagaccccagacatgatgggagag
agagtcaagaagattattaaacccacaaagtttgacagagttgtgaaaagagaaatctgt
cagttgacttccaaggggaccagagtgttcacggtccaggatggagaatctgttggtgcg
gatgcttcctatcttttggctctcactgagaaggaatgcgatggtggaaagtctttgtat
ggagtttgttttgtggacacttcaattgcaaattttcaccttggtcaatttacggatgac
aagcattgctcacggttgcgtaccttgtttgcccactatcctccagctcaggttttgtac
gaaaggggtcagctatccccacgtactcaacaggtgctaaatacttctttgacttctgca
atcaaagaacatttagctccagagtcagaattctggagttctacaaaaactttgacaact
ttgtcagaaagaaagtattttgaagatggcactcctgaaggacttaagccatttcttagt
gattctgactcactgggcctgactgcaagcgacgaggctgaccttgcagtgaaggctctt
ggtgccgtcacatggtacctgagtaggtgtcagttagaccagcagttgctatcaatgggc
cagttcacaacatataagcctgtagatcaagaggttcctttacaagaggataagaagtcg
tcagatgttataactgctagacatatgattcttgactccactactctgaagaaccttaat
gttttggaaaactcatgtggtggaacagctggcactttattgtcaaagttggaccactgt
tctacccccatgggaaaaaggttactccaccagtggttgtgcagtccgttgacagggatc
aagagtattgaggctcggcagcgtgctgtcacagaactgattggtcagcccgacctggtg
cagagtgtacgaggcctcatgaccaagctcccagacctggagagactactgtcaaggata
ttcgctcagagtagtcgtggacaaaatgcttctcacccagatagtcgagccatattcttt
gaagaaaaaactcattcaaagaaaaaaatcatagagtttatatcagttctaaatgggttt
caagcagctcaagaaattgctgaaaaatttcagggctcaggtgttggagagttatctgaa
attctttgtcagtgctcccattttccatccaccaaccctcctggaaagtttccagatcta
tcggatcatctaacctttttcaagaatgcgtttgaccacacagaggccagcaaagaaggt
cacatcataccaagtgctggtgtggatccagactatgatgaagctgttgaagctttaact
ttactagagtccgagcagaaagcatatctgaaaagtcaatgcgaattctttaaaactact
ttgaagtacgttggaacagacaagaagaggttccagctggagataccagaagctgcctgt
cgcaagattacctcctcggactatctgctgcagggtcagaggaagggctttaagaggtat
tggacttccaaaactaaggagtttttggaaaaccaaatggcggcagaagaaagaaagaag
aacgtcttacacggcctaagaaaacgaattttctctcgattcagtgaaaggtacacagat
tggatggcagcggttcagtgtgtatcagtactagatgtacttatgtcctttgccgagtac
agtagacgtcaagagggtgacatctgcattccagagttccagccaactgacacatgtatt
cagccgtttgtgaagctcaaaggtggcagctatccatgtaccactggggacgaagttttc
atcccaaatgacacagtgattggagaccctaccacacgatctcccagtctgatactggta
accggtcccaacatgggaggcaagtccacactgatgcgacaactaggactcctcaccatc
atggcccaactgggatgcagagtaccagcagagagccttaagttgagcccagtggaccgc
atctttacccgacttggagctaatgatgacattatggcaggagagagcaccttctatgtt
gagttgtgtgagacgtctgctatcctagctcatgccagtaaacactctcttgtccttatc
gatgaactaggtcgaggaacatcaacatatgatggaactgccatagcgcatgcagtgtta
agacaactgacaacgatgcaatgtcggacactgttttctactcattaccactctctggtt
gaggatttcaaggactgtgataatgttgctcttggtcacatggcatgtatggcagagtcg
gagatggaggaggagggtgaggggatacaagaaaacataactttcctgtacaagtttgca
gccggagcctgtccaaaatcatatggattcaacgctgctaggttggcaggcgtaccggct
cacattatcaaagtggggtatgctcgcgctaaggcgcttgaggctgagtgtcgcttgcgc
aagacattccagaacattttcttaaaggagattaacgttgatctgttcaaacagcagatt
tcagctctctaa
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