Homalodisca vitripennis (glassy-winged sharpshooter): 124360659
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Entry
124360659 CDS
T09217
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124360659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvi03400
]
124360659
DNA repair and recombination proteins [BR:
hvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124360659
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
HisK_N
Motif
Other DBs
NCBI-GeneID:
124360659
NCBI-ProteinID:
XP_046670431
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Position
4:173072220..173161899
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AA seq
913 aa
AA seq
DB search
MSKPSQLCNMDSYEQSVFVSFFKRFPEKPATTVRFFNRIDYYTLHGSNAVYAAKEFFKSS
AVIKYIGSGTEKLESLILNKAQFEGFVRELLLVKQYRVEVYTKSSTASNDSWQLEFKGSP
GNLYQFEDLLFSNSDQVAGSGIIAVRPSTDHQSKVVGVALVDTIENTFSVCEFADDDYYS
NLESLVVQLTLRECLLPSDNIADVETIKKVIERSGLLVTSRKRSEFNRDDTTQDLNRLIM
FEEGQQQSVNALPESKFTTALSALGAIIRYLELCNDGENFGQFKLQLLDHSRFVHLDSAA
VAALSLLPQPGHSAAKHHSVLGLLDHCRTQQGHRLMAQWVKQPLRDLAAINERHDIVNTI
ANDTGLRQALTEENLRHIPDLQVLSNRLQRKKASMQDCYRIYQALKKFPFLLETLGEENV
TISSVFFQPMQALLLDMQNLQEMIESTLDFSLVDKGEFLIKPEFDDDLKELRYKMDSYED
DIRKTLNKAARDLSLEPGKTIKLESNSQYGYFFRVTLKDEKVIRNVKGYTELDANKSGVR
FRSNELTDLNNEYQQARDEYTKQQEAIVAEVISVAAGYSQTLQSLGHLVAQLDVLTSLAM
VAVSAPVPYVRPVMHAKDTGILSLKQARHPCLEMQEAVSYIANDVNFKQGECTFCMVTGP
NMGGKSTFIRSIGVVALLAHIGSFVPCEFAEISVLDSILARVGASDSQVKGMSTFMVEMV
ETASIIRTATSNSLVIIDELGRGTSTFEGCGIAWAIAEHLAVTSKSFTLFATHFHELTRL
SESVKTLANLHVTAVTEQDTLTLLYQVRPGACDQSFGIHIAQMARFPPSVIQDAKRKLSE
LEDHQSLIIAENDEKKRKIIQDGEKIMEEIIEECKKLKQQNLVDSDVAAAIAKLKKEALS
RNNPYINALLAKA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaccatctcagctgtgtaatatggactcgtacgagcaaagtgtctttgtatcg
ttcttcaaacgtttccctgagaaacctgctacaacagtaagattcttcaatcgcatagac
tattacacattgcatggttctaatgctgtttatgctgccaaagaattttttaaaagttct
gcagttatcaaatacattggctcaggtacagagaagttagagtcgctgatcctgaacaaa
gcacagtttgaggggtttgtgcgagagctactgcttgtgaaacagtacagggttgaggtc
tacaccaaaagctctacagcttccaatgattcttggcaacttgagttcaagggctcgcct
ggaaatttgtaccagtttgaagatttgctgttctccaactcagaccaggttgccggttca
ggcatcatagcagttcgcccctccactgaccaccagtctaaggttgtgggagttgctctg
gttgacaccatagaaaacacattttctgtgtgtgagtttgctgatgacgattactacagc
aatcttgagagcttggtggtccagctaactcttagagagtgtcttctgccttccgacaac
attgctgatgtagaaactattaaaaaagtgatcgagaggagtggtttactggttacttct
cgaaagcgctctgaatttaaccgagatgacactactcaagacctcaatcgactgatcatg
tttgaggaagggcagcaacagagcgtcaatgctctgcctgagagcaagtttactacagct
ctctctgcacttggagccattattagatatttagagctgtgtaatgatggagaaaacttt
ggacagttcaaactgcagcttctggaccacagtaggtttgttcacctggactcggctgca
gtggctgccctcagtttactgccacagcctggacactcagctgctaaacatcacagtgtc
ttaggactgctggaccactgtcgaacccagcaaggtcatcgattgatggctcaatgggtg
aagcagcctctgagagacctggcagctattaatgaacgtcatgatatagtaaatactata
gccaatgatacagggctccgtcaagccctgacagaggagaacttacgtcacatacctgat
cttcaagttctatcaaatcgtctccaacgaaaaaaggcatcaatgcaagattgttacagg
atatatcaagctttaaagaaattcccatttcttctcgagactctaggtgaagaaaatgtt
acaataagtagtgtattctttcaacccatgcaagctctattactggacatgcaaaatctc
caggaaatgattgaatctacactggatttcagtttggttgacaaaggagagtttttgata
aaaccagaatttgatgatgatctaaaagaactgaggtataaaatggacagttatgaagat
gacattagaaaaactttgaacaaagctgcaagagatctttcattggaacctggcaagaca
atcaaattggagtccaactcacaatatggttatttcttcagagtgactttaaaggatgaa
aaagtgattcgcaatgtaaaaggatacacagagttggatgcaaacaagagtggagtgcgg
ttccgcagcaacgagttgacggatcttaacaatgaatatcaacaagcaagagatgagtat
accaaacagcaggaggctattgttgccgaggttataagtgttgcagccgggtacagccag
acacttcagagcctaggtcatctggtcgctcagctggacgtgttgacaagtctggcaatg
gtagcagtgagtgctcctgtgccgtatgtgcgcccagtcatgcacgctaaagacactgga
atcctctcactcaaacaggctcgccatccttgcctagaaatgcaagaggcagtctcgtac
attgctaatgatgtgaatttcaaacaaggcgaatgcacattctgcatggtgacaggacca
aacatgggaggtaaaagtacattcatccgcagtattggtgtagtggcacttctcgcacat
attggcagtttcgtgccctgcgagtttgctgagatatcggtgttggacagtattcttgcc
cgtgttggagccagcgattctcaagtcaaggggatgtccactttcatggtagaaatggtg
gaaactgcttctattatcaggactgctacgagcaactctttggtgataattgatgaatta
ggaagaggaacatctacgtttgaaggttgtggaatagcctgggcaattgcagagcattta
gcagtaacatcaaaatcattcacattgtttgccactcacttccatgagctgactcggttg
tcagagagtgtaaagacactggccaatctgcatgtgactgcagtaactgagcaagacact
ctgactctgctgtaccaggtgcgcccaggtgcctgtgaccagagctttggaatccatatt
gcccaaatggccaggttcccaccatcagtcatacaggacgctaagaggaagctctcagaa
cttgaagatcatcagagtctgataatagcagagaatgatgaaaaaaaacgcaaaattatc
caggatggagagaagataatggaagaaattatagaggagtgcaagaaattgaaacaacag
aatcttgttgatagtgatgtagcagcagccatcgcaaaactaaaaaaagaagcactatca
cgaaacaatccttatattaatgcactattagctaaggcctga
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