Homalodisca vitripennis (glassy-winged sharpshooter): 124363302
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Entry
124363302 CDS
T09217
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hvi01009
]
124363302
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124363302
04131 Membrane trafficking [BR:
hvi04131
]
124363302
03036 Chromosome and associated proteins [BR:
hvi03036
]
124363302
Enzymes [BR:
hvi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124363302
Protein phosphatases and associated proteins [BR:
hvi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124363302
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124363302
Membrane trafficking [BR:
hvi04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124363302
Chromosome and associated proteins [BR:
hvi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124363302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
124363302
NCBI-ProteinID:
XP_046674487
LinkDB
All DBs
Position
5:183043608..183087869
Genome browser
AA seq
1110 aa
AA seq
DB search
MSKSQKKLEARVARKSPRINQFQEVAPLESRGKQNQNLQKSKPQRKNEMFIEDVYEKSQS
AKDMIRGSTGLVYDTRMVKHRCLWYPAHLECPDRFMKTLDRCEELGLVKRCQPVDVREAT
ETELLTCHTQAHIDRLRETNNNHDVDQMEQLASKFDAIYIHPETFNLALLSAGCTIQLVH
EVCSGTVQNGMAIVRWVGHHAMHNEFCGYCYFNNVALAARHALDNLGPLRRILIVDWDVH
HGQATQQMFYDDPRLFYFSIHRYEHGEFWPNLRESEYDYVGEGQGAGYNFNVPLNAVGMA
DADYLAIFHQLLLPMASEFQPELVIISAGYDAAVGCPEGEMAVTPACYAHLISSLMALAS
GKVAVILEGGYCLRSLAEGAALTLRALLGDPCPNLPPLSAPCPSIQTTILNCIYSHRQFW
QCFQWQGSYLAADRDPESEGQHWPEVHFRYSGPAHLEVYPTRDTCPVQSQDTVDHINRTL
DHLIAETKLFKTKHDVCFVYDALMMEHKNLKDTSHPERPTRILRIFEKHLEFNLHNRLFM
LQSRSASREELLLVHKAEYLKEMEELCASTEQMTDDVKHQHYVLEKKNSVYVHPKSYKCA
SLAAGCLLQVVDSVLQGESKSGVALIRPPGHHAESYEACGFCVFNNVSVAAKYAIKNYGL
KRILILDWDVHHGNGTQRIFLSDPQVLYMSIHRYDHGTFFPCSEDAAATVVGSGAGMGFN
VNIPWNQKGMGNAEYVAAFHQVVLPIAYQFAPELVLVSAGFDAAVGDPLGGCKVSPEAYG
LMTSWLAPLAMGRVILCLEGGYNLTSISHSMTMCTKALLGDPVPLVDLHLPIKASAATDL
KTVLTVQTKYWSALCFNKTFPKEDVLGEVKIKETVPATNNKELADRLAAPDMNIDKKEKE
NDLQDLELKFSSVMSISEDRIANKETVSPNSSGHDTLVKQVPNEEGQQPSSSTCRDETPQ
PGSSQSSLASREGKQMLISVTLDTILTELGMDEGFAVHPRHDCPHLPAVTGVPTTGISVS
SPCSDCTPDTATQENWICLTCYSVRCGRVVKEHMLFHSAELSHPIVLGFEDLSVWCYLCE
SYIESPVLYEAKNAAYMSKFGETMPNIYPE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaagtcaaaagaagttagaagctcgagtggcgaggaaatctccgaggattaat
cagtttcaggaagttgctccgttggagtccagaggaaaacagaatcaaaatcttcagaag
tcaaagcctcagagaaagaacgaaatgttcattgaggatgtgtatgagaagtctcagagt
gcgaaagatatgattcgaggcagcacagggcttgtgtacgacactcgtatggtgaagcac
aggtgtctgtggtacccagctcatctcgagtgtccagacagattcatgaaaacattagac
agatgtgaggagctcggactggtgaagcgctgtcaaccggttgatgtcagagaagctacc
gagactgaactgctgacgtgccacactcaggctcacatcgatcggcttagagagacaaac
aacaaccacgatgtggaccagatggaacagttagcatctaaattcgatgccatctacatt
cacccagaaactttcaacttggctctattgtcagctggttgcaccatacaacttgtccac
gaagtttgcagtggcacggttcaaaatggaatggctattgtgaggtgggttggacatcat
gcaatgcacaacgaattctgtggctactgttacttcaacaatgtggcgttggcggcccga
cacgccctggacaatctgggtcctctccgcagaattctgattgtggactgggatgttcat
catgggcaggcgacacaacagatgttctatgatgatcccagattgttttatttctctatt
catcgctacgagcatggtgagttctggccgaacttgcgtgagtcagagtatgactatgta
ggagagggccaaggcgcaggctacaacttcaacgttcccctcaacgctgtcggcatggcc
gatgccgattatctggcgatcttccatcagcttctgttaccgatggcctcggagtttcag
ccagagttggtgataatctcagctggctatgatgctgccgttggatgtcctgagggagaa
atggcagtgacaccagcgtgttatgcacatctaatatcatctctaatggcactggcttct
ggaaaagttgctgttatattagagggtggctactgtctacggtcactggcagaaggtgca
gctctcacactgcgggctctcctgggtgatccatgtccgaacctgcctccactctctgct
ccctgccccagcatccagacaaccatactgaactgcatctacagccatcggcagttctgg
cagtgctttcagtggcaagggagttatctggcagcagaccgagatccagagagtgaaggc
caacactggcctgaagtacatttcaggtacagtggacctgctcacctggaagtgtatccc
acccgggatacgtgtccggtccagtcccaggacacagtagaccacatcaaccgtaccctg
gatcatctcatagcagaaacaaaacttttcaaaacaaagcatgatgtttgttttgtatat
gacgcattaatgatggaacacaaaaatttgaaagacacgtcacatccagagagacctact
cgtattctcaggatctttgagaagcatttagagttcaacctgcacaatagactgttcatg
ctgcaaagcagatctgcgtctagggaagaattgctattagtccacaaagcagagtatctg
aaagagatggaagagctgtgtgcctcgactgaacaaatgacagatgatgtaaaacatcaa
cattatgtactagagaagaagaactcagtttatgtacaccccaagtcatacaagtgcgca
agcttagctgccggatgcttgctgcaggtagtggacagcgttctgcaaggcgagagcaag
tctggggtagcactgatcagaccgccaggtcaccacgcggaatcgtacgaagcttgcggc
ttttgtgttttcaacaacgtctctgttgctgcaaaatatgcaattaaaaactatggtcta
aaaaggattttaatactagactgggatgtccatcatggaaatgggacacaaaggatattc
ctgtcagatccgcaggtgttgtacatgtccatacacagatacgatcacgggaccttcttt
ccgtgctcggaggatgccgcagctacagttgtaggctctggcgctggtatgggcttcaat
gtcaacattccatggaatcagaaagggatggggaatgcagagtatgtggcagccttccac
caggtggttctgcccatagcctaccagttcgcacctgagctggtccttgtgtctgcagga
ttcgacgctgcagtgggtgacccattaggaggatgcaaggtgtcaccggaagcttacggt
ttgatgacatcatggctggctcccctagcgatgggtagagtgatcctatgcctcgaagga
ggatataacctgacctccatctcccactcgatgacaatgtgcaccaaggctctgctggga
gatcctgtacccctggtggacctgcacttgcctatcaaggcatcagctgcaacagacctc
aagacagtactcactgttcagaccaaatactggtcggcactgtgcttcaataaaaccttc
cccaaagaagacgtcctcggtgaggtgaagatcaaggaaaccgttcccgcaacaaataac
aaagaactggcagacagacttgcagctccagacatgaatattgataagaaagaaaaagaa
aacgacctgcaagaccttgaacttaagttcagttctgtgatgtccatttcagaagatcgt
atagctaataaggagacagtgagtccaaacagttcagggcatgatacgcttgtaaagcaa
gtccctaatgaagaaggacagcaaccatctagcagcacttgtagagatgaaactccccaa
ccagggtcttctcagagctccttggccagtagagagggaaagcagatgttgatctcagta
acccttgacaccatcttaacggaactaggcatggatgaagggttcgcagtacatcctcga
catgactgtcctcacctcccagccgtcacaggtgtaccaactacaggcatcagcgtcagc
tcaccttgctcggactgtactcctgacactgccacgcaggagaattggatatgtctcaca
tgttactctgtccgctgcggtcgagtggtcaaagaacatatgttgttccactctgctgag
ttgtcacatccgattgtactgggcttcgaggatctctcagtctggtgctatctctgcgaa
tcttacatcgaaagtcctgttctttacgaagcaaaaaatgcagcttacatgagtaaattt
ggagaaacaatgcccaacatctaccccgaatga
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integrated database retrieval system
