Homalodisca vitripennis (glassy-winged sharpshooter): 124364182
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Entry
124364182 CDS
T09217
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi04512
ECM-receptor interaction
hvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124364182
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124364182
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hvi04147
]
124364182
00536 Glycosaminoglycan binding proteins [BR:
hvi00536
]
124364182
Exosome [BR:
hvi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124364182
Glycosaminoglycan binding proteins [BR:
hvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124364182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124364182
NCBI-ProteinID:
XP_046675423
LinkDB
All DBs
Position
6:complement(30534197..30632317)
Genome browser
AA seq
1782 aa
AA seq
DB search
MGAFYNVLVCASFLLAETTVAQYERSYGRYYPQEVNPQSIGLFNRLNPPAPQSPNYEIRN
FGKFDQRGDSANCIPKCFAEKGNRGFPGSPGLPGPQGQQGFPGMEGLPGPAGSKGDTGPQ
GPRGIKGDRGKIGAPGFPGINGIPGIGGPPGLPGIPGLDGCNGTDGLPGLPGSQGFPGPR
GLPGLDGAKGDRGLPAYGGIYPKGQKGEPGFPGQHGGRGFTGDLGPMGPPGFKGDMGQKG
EQGLPGLKGEKGKEREVTFECEKGDKGTKGQPGPPGEPAYSPSEQPEGRTVGPIGEPGMK
GDRGDDGPQGYKGEPGPMGDPGLPGSLGMKGEKGLVGPPGLRGRDGYPGGPGPVGQKGDR
GSDGLAGLPGRIGSKGEPGRDGVAGPPGLRGPAGPPGGGTGQPGPKGEPGPRGYPGLQGP
KGVDGYDGPQGERGPPGQPGGPGIPGTPGPEGFPGPKGQKGEQGLPGFPGDIGPIGYQGP
PGPEGPRGFTGEKGLSIMGPKGLDGYPGTDGDKGQKGEPGYPGATGAPGDSRNGIPGAQG
PRGDKGDRGFEGLPGTPGTPGRDGAKGDIGGRCLDCLPGQKGDKGEAGRDGSAGREGLQG
PPGERGYPGLVGDPGLPGPQGTPGEPGAPGIQGLPGVQGQRGQDAEISRDFTITQKGEQG
PRGDPGRDGPKGDKGIMGPPGTSGNPGFPGDRGDKGDRGFPGVDGSPGRDGTPGFVGEKG
TSVKGEQGIAGRPGDRGDKGEPGEQGEKGTAGHCNVPDIGTLYKGERGPPGRKGEPGPAG
FSGVPGDKGDTGAPGLSGLTGPPGPPGNVGGRGLPGPRGDKGDMGPMGFPGEPGQLGPRG
PPGDLGRRGDKGEPGIPGVGPRGPPGALGYPGEKGLPGPPGKYGSPGEPGMNGLPGEKGD
AGVPGLDGLTGATGPKGDAGVEGPPGRPGIDGISGQKGDPGIPGLIGERGRAGVPGFPGV
KGEQGTPGADGPKGFQGPRGPPGIPGSPGMDGIPGAKGDKGNAGVMGFIGPVGPEGPRGP
VGLPGLTGDKGFTGPPGPMGPIGLLGPKGEPGPVGPWGPKGEPGQASEKGQKGEPGMPGL
RGEDGPTGADGRMGIKGEAGLPGIGRPGLPGPKGDAGLDGIPGRNGIPGAKGVAGLPGYP
GDKGDRGFPGIPGALGDPGLDGIPGANGDPGLTGPPGYPGLKGDKGLPGQSGLNGPKGDK
GSLGGQGVIGYPGVRGEKGDRGPEGPTIEIKGDKGEPGAPGLQGFSGAKGDQGFIGPPGQ
QGFKGDRGFPGPIGPQGRPGFDGVKGDKGFPGLPGPPPIKGEKGLPGLICKHGRIGAPGI
PGQKGEPGFPGLPGKQGPVGPIGSVGAPGDKGDRGFPGIPGPPGQDGPPGFPGKDGLPGF
QGPKGDAGRPAAIGSPGEKGNQGPPGQKGASGYDGQKGDRGMDGLPGFVGPPGKMGEPGS
PGRDGAPGSPGFNGIKGDKGEPGFIPPPGQKGDKGMPGLPGIQGPQGPMGREGPPGIDGM
KGDRGLPGPAGIPGALGPPGARGDPGFDGRPGLIGQPGLPGAIGQPGQPCLDEGDYMTGI
LLVKHSQTEEVPKCYQGHHKLWEGYSLLYTEGNEKAHNQDLGFAGSCIRRFSTMPFLFCD
FNDVCNYASRNDKSYWLSTNSPIPMMPVEESGIAQYISRCVVCEAPSNVIAVHSQSINVP
DCPNGWDGLWIGYSFVMHTAAGAEGGGQSLASPGSCLEDFRATPFIECNGARGTCHYFAN
KLSFWLATIEESEQFVTPRKQTLKKGNLLQRISRCQVCMKKT
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgggggctttctacaatgttttggtctgcgcgagttttctgctggcggagacgacagtc
gcgcaatacgaaaggagctatggacgctactatccccaggaagtgaacccccagagcatc
ggtctctttaaccggttaaacccccctgcaccacagtctcccaactatgaaatacgcaat
ttcggaaaattcgaccaacgaggggactcggcaaactgtatacccaagtgtttcgctgaa
aaaggaaacaggggatttccaggatcacccggactacctggaccccaaggacaacagggt
ttccctggtatggaaggactcccaggtccagcagggtccaagggagacacaggtcctcag
ggtcccagaggcatcaagggtgatcggggaaagattggtgctccaggatttcctggaata
aacggaatcccaggaataggtggaccccctggtttaccgggaatcccaggtttggatggg
tgtaatggcactgatgggctacctggtctccccggaagccagggattcccaggacctcga
gggttgcctggcctggatggtgctaagggtgacagagggcttccagcttatggaggaata
taccctaagggacagaaaggagagccgggattcccaggacaacatggaggcagagggttt
acaggcgatcttggaccaatggggcccccaggcttcaaaggagacatggggcaaaaggga
gagcaaggactgcccggtttgaagggagaaaaaggaaaagaaagggaagtgaccttcgag
tgtgagaaaggagacaaaggaaccaagggacagcctggtcctcctggtgagccagcctat
tcaccctccgagcaaccagagggtcgaacggtaggacccatcggagaacctggcatgaag
ggagacagaggagatgatggtcctcagggatataaaggtgaaccaggtcccatgggagac
ccaggactacccggatctctgggcatgaagggagagaaaggtcttgtcggacctccaggc
ctcagaggacgtgatggttacccaggaggtcctggaccagtgggtcaaaagggagatcgt
ggttcagatgggctggcaggacttccaggcaggataggatcgaaaggagagcctggacgg
gatggagtagctggaccgccaggattgagaggacctgcaggacctccaggaggaggtact
ggtcagccaggtcccaagggagagccaggacctaggggctatcctggtcttcagggacct
aagggagtagatggttatgatggtccacaaggagagagaggacctccaggccaaccagga
ggcccaggtatcccaggtacgcctggacctgagggcttccctggacccaaggggcagaaa
ggagaacaaggccttccaggatttcctggagacattgggccaattggctaccaaggacct
cctggaccagaaggccccagaggctttactggtgaaaaaggactttccataatgggtcca
aaaggtttagacgggtatccaggaacagatggagataaggggcagaagggtgagccagga
tatccaggagctacaggagctcctggagattctagaaatggaattcctggcgctcaaggt
cctcgtggagacaagggagatagaggctttgaaggattacctggaactccaggcacacca
ggacgtgacggcgcaaagggtgacataggcggcagatgtctggattgcctgccgggacag
aaaggtgacaaaggagaggctggaagggatggatctgcagggagagagggacttcaaggc
ccaccaggagagagaggttacccaggactcgtgggagatcctggattaccaggtccacag
ggtacacctggtgaaccgggagccccaggaatccaaggtctcccgggagtacaaggccag
agaggtcaggatgcagagatctccagagactttactataactcaaaaaggagagcaagga
ccgaggggcgatccgggacgagatggacccaagggtgacaagggtataatgggtcctcct
ggtacttcaggtaacccaggcttcccaggagataggggtgataagggggatagaggattc
cccggagtggatggttcaccgggacgagacggtacaccaggttttgtcggagaaaagggg
acaagtgtcaagggagaacagggaatagcaggaagacctggagatagaggagacaaggga
gaacctggagaacagggagaaaagggcactgcaggtcactgcaatgtacctgatattgga
accctttacaagggggagagaggaccgcctggacgcaagggtgaaccaggacctgcagga
ttcagtggagttccgggagacaaaggggacactggcgctccgggtttaagtgggctgact
ggtcctccaggaccaccagggaatgtaggcggacgaggtcttcctggacctcgtggtgat
aaaggagacatgggacccatgggcttccctggtgaacctggacagttaggacctagagga
cctccaggagacttaggccgacgaggagacaagggagaaccaggtattcctggagtagga
ccaagaggacctcctggagcacttggataccctggagagaagggtcttccaggacctcct
ggcaaatacggcagtcccggagaacctgggatgaatgggctccctggggagaagggagat
gcaggagtacctggactggatggcctgactggagctacaggacccaaaggagatgcaggc
gtagagggtccaccaggaagaccaggaatagacggtatatctggacaaaagggagatcct
ggtattccgggtttgattggtgagagaggaagagcaggagtacccggattcccaggagta
aagggagagcaaggaactccaggagctgatggtcctaaaggtttccagggtccacgagga
cctccaggtatacctggatctcctggcatggatggtatacctggtgcaaagggagataaa
ggtaacgcaggagttatgggattcataggacctgtgggacctgagggtccacggggtcct
gttggtttgccaggactgacgggagataagggattcaccggacctcctggccccatggga
cccatcggactcctgggccccaagggtgaacctggacctgtgggaccttggggaccaaaa
ggagagccaggacaagcatcagagaagggacagaagggtgagccaggaatgccaggactt
cggggagaagatggcccaacaggagcagatggcaggatgggcattaagggtgaggcagga
ctgcctgggatcggtagacctggacttcctggaccaaagggagatgcaggattggatgga
ataccaggacgaaatgggataccgggagctaaaggagtagccggactaccaggctatcca
ggggataaaggagataggggattccccggtattccaggagcacttggggacccaggatta
gatggcatacctggagccaatggtgatcctggattgacaggtcctccaggataccctgga
ctgaagggagacaaagggctacctggacaatctggcctaaatgggccaaaaggagacaaa
ggaagcttaggtggacaaggagtgataggctatcctggagtgagaggagaaaagggagat
aggggccctgaaggaccaacaatagaaataaagggcgacaagggagagcctggtgcccca
ggactgcagggcttcagtggagcgaagggagatcaagggttcataggaccaccaggacaa
caaggtttcaagggcgacagaggattcccgggccctattggacctcagggaaggccagga
tttgatggtgtcaaaggtgataaaggtttcccaggcttgccaggcccacctccgataaag
ggtgagaagggtctgccgggtcttatttgcaaacatggcagaattggagcacctggaata
cctggacaaaagggagaaccagggttcccaggattacctggaaagcaaggtcctgtgggt
cctataggatcagttggagcacctggggacaagggtgacagaggcttccctggcattcct
ggcccaccaggacaagatggacccccgggattccctggaaaggacgggttgccaggattc
caaggacctaaaggagatgcaggcaggccagcagcaattggatccccaggcgagaaggga
aaccaagggccaccaggtcaaaagggagcatctggctatgacggacagaaaggagatcgg
ggcatggatgggctgcctgggttcgtaggacctccgggcaagatgggtgagccaggatcc
ccaggtcgggacggggctcctggatctcctggctttaacggcatcaagggtgacaagggt
gagcctggtttcatccccccacctggacagaagggagataagggcatgcccggccttcca
ggaatccaaggtccacagggaccaatgggtcgagaaggacccccaggaatagatggaatg
aagggtgataggggactgccaggaccagcaggaattccaggtgcacttgggccaccgggt
gcaaggggagatcctggatttgatggaagaccaggattgataggtcagcctggactccca
ggagccattgggcagcctggacagccttgcttggatgagggagattacatgacagggata
ttgctggtgaaacactcccagactgaggaagtgccaaagtgttaccaaggacaccacaag
ctctgggagggctacagtcttctgtacacagaaggcaatgagaaggcccacaaccaggac
ttaggatttgccggatcatgtataaggcggttctcaacgatgccattcttattctgcgat
ttcaacgatgtgtgcaactatgccagcagaaatgacaagtcatattggcttagtacgaac
tcaccgatacccatgatgcctgtcgaagagtccggaattgcacaatacatttcaagatgt
gttgtctgcgaagctccaagcaatgtgattgcagtgcacagtcaatcaatcaatgtgcca
gactgtcctaacggttgggatggcttatggatcggctacagctttgttatgcatacagct
gcaggtgctgaaggaggtgggcagtcactggcaagtcctggttcttgcctggaagacttc
cgtgcgacaccgtttatcgagtgtaatggagcgcgcggtacctgccactacttcgcaaac
aagctgagtttctggctggccacaatcgaggagagcgagcagtttgttacaccacgcaaa
cagacgctcaagaagggcaacttgctgcagagaatcagcagatgccaagtgtgcatgaaa
aaaacctag
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