Homalodisca vitripennis (glassy-winged sharpshooter): 124364396
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Entry
124364396 CDS
T09217
Name
(RefSeq) RNA polymerase II-associated protein 1-like
KO
K20826
RNA polymerase II-associated protein 1
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvi03021
]
124364396
Transcription machinery [BR:
hvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
124364396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
124364396
NCBI-ProteinID:
XP_046675794
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Position
6:63901455..63973574
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AA seq
1054 aa
AA seq
DB search
MATPKKQSIFAQRMQNAKKLKSQDNRNVAAVSSGAPNFQVEAACFGEKSNIVHGPDAGII
HEENVKRLASMSPSEIEEERNKLIANLDPSIVDFLRSRKTTKVNSNQTKRHDPTPSSCSM
EISDVPVVTQTPVAELVNKYPHMDVLEPDKLEWMQEVPPPQPPAPGCPYSARFNFDGELM
PYTNDTKTDGLYHHGEEPDRPGYTLQELMQLSRSSMLQQRITAISTLANIFHKASDYDYC
LERPLLPQLLNSELYLLLRFTLDDPVRSVVSAAIAAIANLLVNVKDEGCLDRLLGTLPGL
FQPSFYVHLDLKPSELNELKDTELLKVDVIRGALRTHLLPRFRYILDKLDPEPVEISHIM
RCLTRIVRHSHEAAFSISRAPGLLDAVRRLLNKQPPVACSESMKLFRVMACQSRGLAEYL
VETHSLVEPIQRFIAGDRDETTMSLALESFYTWQTLLSYHLTTSNVPMFMPVIQRLLVGY
AENISLDSAGGDLAHATALVYWIVRVLRVDLSCAQCLLPAFQLCALKWLSQATTISPLQW
AANTLLGAVLHAVAVLITLQGLKNVEIEQKVGLFFRSDNFIHTTQRLRKYSWLMEGEKSP
SVVDSLPCLGSVPPIIYDDSPLPLIMGLTVYLNAVRSPQLSEALVTAEGVQRYLEVVTGE
IRTTTAHWFARQELIFVQTLLQVHLHIQNPVKNSLVHQAALFLSTSIHADDRYMLANLFD
QFVFNKKFFSSEISDLPEQLQSLQIGQDLNQATLSTPSQLASSRRTKLLNEALDSLETIS
LCYKREFGLEGLRLSSPFPALTGSHCGTDPALPSDWHFLPIVHLHNIDGKREDAKCVAVS
CLQWSLVLECMRPRFVANLSVASRFCRLACVLLAGSDLFRDTQEWLEEVLQALLVHNEHI
NFDEPIPGLKSFYDFYRQILEQFVGVSYGDQLFGRFVLIPLQQQHNIKLRKLIWCELGAA
LRFLSTPVSQVPLIKYLEPCETDPDLLFIYLSALAQGRVKETFCPVLYRVAVHHVCTYIS
RYPDLPATRRLAQMVQALGNQELKSLLMNYHVSK
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacctaaaaaacaaagtatttttgcacagcgaatgcaaaatgccaagaagtta
aaatcacaagataacagaaatgtagctgctgtatcatctggtgcgccaaattttcaagta
gaagcagcctgttttggtgagaaaagtaacattgttcatggacctgatgctggaattatt
catgaagaaaatgtgaaaagacttgcatcgatgtcaccatcagaaattgaagaagaaaga
aataagctgattgcaaatttggatccatcaattgttgactttctgagatctagaaaaact
acgaaggttaattctaaccagactaaaagacatgaccccacacctagttcttgtagcatg
gagatcagtgatgtgccagtggtcacacagactccagttgcagagttagtcaacaagtat
ccacacatggacgtgttggaacctgacaagttggagtggatgcaggaggttcccccaccc
caacctcccgcacctggctgtccatacagtgctaggttcaactttgacggagagctgatg
ccatatacaaacgatacaaagacagatggactgtaccaccacggggaggagccagatcgt
cctggctacacgctgcaggagttgatgcaactcagtcgttcttccatgctgcaacaacgt
atcactgccatctctactctggccaacatatttcacaaggccagtgactacgactactgc
ctggagcgcccactactgccacaactactcaactcggaactgtacctgctcctcaggttc
actctggacgatcctgttaggtctgtggtttctgctgccattgctgccatagccaacctc
cttgtcaatgtgaaagatgagggatgtctggatcgcttgctggggacactacctggattg
tttcaaccgtctttctacgtccacttggacctgaaaccttcagaactcaacgagctgaaa
gacacagaactattgaaagttgatgtcatccgaggtgcattgagaactcacctcctgccg
agattcaggtatatcctggacaaactggaccctgagccagtggaaatctcacatatcatg
aggtgtctcacccggatagtgagacactcccatgaggctgctttcagtatttccagagct
cctggcctcctggatgccgtgcgcagactgctgaataagcagccaccagtagcctgctca
gaatccatgaagctgttccgtgtgatggcttgtcaatcgagaggcctggcagagtatctt
gtggaaacccacagtttggtggagccgattcaacgcttcattgctggtgatcgtgacgaa
acaacaatgagtctggccctggagagtttttacacctggcagacacttttgtcctaccac
ttgactaccagtaatgttccaatgttcatgcctgtgatccaacggctgctggtgggttat
gccgagaatatcagcctggatagcgcggggggagatcttgcacacgccactgcacttgtg
tactggattgttcgtgtgctacgcgttgacttgtcctgcgctcagtgcctcctaccagca
ttccaactctgtgcgctcaagtggttgagtcaggccacaaccatttcccccttgcagtgg
gctgccaacacattactgggagcagttctacatgctgtagcggttctcattaccttacag
ggcctgaaaaatgtggaaatcgaacaaaaagtggggttattcttccgcagtgataacttt
attcataccacccaacgtttgaggaagtactcctggttgatggagggagaaaagagccca
tctgtagtagacagtctaccttgtctgggctcggtgccgccaataatatatgacgacagt
ccactgcctctcatcatgggcctgacagtctatttgaatgctgtgcgttcaccccagctg
tcagaggcattggtgacagctgaaggtgtccaaaggtatctggaagtggtgactggagaa
attaggactacaacagcccactggttcgcccgccaggagctcatttttgtccaaacactc
ttgcaggttcacttacacatacagaatcctgtgaagaacagcttggtacatcaagcagcg
ttgttcctgtcaacttctatacacgctgatgatcgttacatgttggccaatttgtttgat
caattcgtcttcaacaaaaagtttttcagttctgaaatatcagatttaccagaacagctt
cagagtctacagataggccaagatctgaaccaagcaaccctctcaacaccctctcaactg
gcttcctcaagaagaacaaaactgctcaacgaggctctggacagtctagagacgatcagc
ctttgctacaagagagagtttgggttagaagggcttcgtctcagctcaccgttccccgcc
ctcactggttctcactgtggcaccgaccccgcccttccgtcagactggcactttctgcct
attgtacatctccacaatattgatgggaagcgagaagacgccaagtgtgtggcagttagc
tgtctacagtggagtttagttctggaatgtatgagacctcggtttgtggccaacctcagt
gtcgcttctcgattctgtcggctggcttgtgttcttcttgcaggtagtgacctgttccgg
gatacacaagaatggctggaggaagttcttcaggctctactggttcacaatgaacacatc
aacttcgacgagcccataccaggactgaagtcattctatgacttttaccggcaaatattg
gagcaatttgttggtgtatcttatggtgaccaattgtttggtcgattcgtgttgattccc
ttgcagcagcagcacaacatcaagctacggaaactgatctggtgcgagcttggtgctgca
ctccggtttctgtctactcctgtgtctcaggtgcccctgataaagtacctggaaccttgt
gaaaccgatccggaccttctgttcatttacttgagtgccctcgctcaaggtagagtgaaa
gagacattctgcccggtgttatacagagtggccgtgcatcacgtgtgcacatatatctct
cgataccctgacctacctgccaccagacggctggcacagatggttcaggctctgggcaat
caggaactcaagagtttactgatgaattaccatgtctcaaaatag
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