Homalodisca vitripennis (glassy-winged sharpshooter): 124364845
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Entry
124364845 CDS
T09217
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124364845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124364845
03041 Spliceosome [BR:
hvi03041
]
124364845
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124364845
Spliceosome [BR:
hvi03041
]
Complex B
Other components
Prp19-related factors
124364845
Complex C
124364845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
TPR_8
TPR_12
TPR_15
RPN7
ARM_TT21_C
TPR_10
NRDE-2
DHR-2_Lobe_A
PPR
Motif
Other DBs
NCBI-GeneID:
124364845
NCBI-ProteinID:
XP_046676581
LinkDB
All DBs
Position
6:120425654..120443770
Genome browser
AA seq
853 aa
AA seq
DB search
MPEYTNKSVDLIFSEEDLPYEEEILRNPFSVKHWLRYIEHKKDGTKNAVNIIYERALKEL
PGSYKLWYNYLKLRRRQVKGRCIIDPSFEDVNNAFERSLVFMHKMPRIWLDYCQFLTDQC
RITRTRQVFDRALRALPITQHHRIWPLYLSFLKKHEIHETAVRVFRRYLKLCPEDTEDYI
EYLTAIGRLDEAAVKLAHIVNKEDFVSKHGKSNHQLWNELCELISKNPDKVRSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLGKVMEETASKLNPTEEDDVELELRLARFEHLIERRLLLLNSVLLRQNPHNVHEWLKR
VKLYEGKPHDIINTYTEAVQTVEPKLAVGKPHTLWVSFAKFYEENGQIEDARVVMEKATL
VPYVKVDDLASVWCEWGEMEIRHENYDGALKLLQRATVMPARKVAYHDETETVQMRVYKS
LKLWSMYADLEESFGTFKSCKSVYDRIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLNRYGGTKLERARDLFEQCVENCPPKFAKALYLLYAKLE
EDHGLARHAMAVYERATAAVLPEEMFELFNIYIKKAAEIYGVPQTRQIYEKAIDVLQEDN
CREMCLRFAEMETKLGEIDRARAIYAHCSQICDPRVTAEFWQTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSAASNVSGTVADLAPGAKDGMRMLEAKAAENVPQVKG
GNILFVRGETQGQERDGTDTTRVVNPDEINIDEDDEDVNDSSEDEDEEMPVQKQIIPSEV
FGGLKKDDEDESP
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagtacacgaataaatcagtcgatcttatatttagcgaagaggacctgccttat
gaggaagaaattctaagaaatcctttttctgtaaagcattggttgagatatattgaacat
aagaaagatggaacaaaaaatgctgtgaacattatatacgagagggctcttaaagagctg
cctgggagctacaagctgtggtacaattatctgaagctgagaagaagacaggtgaaagga
cgttgcataattgatccatcgtttgaagatgtaaacaatgcatttgaaaggtctttggtg
ttcatgcataagatgccacgcatatggttggactactgccagttcttaacggatcagtgt
cgcatcacacgcacgcggcaagtgttcgaccgcgcactgagagccctgcctatcacacag
caccaccgtatctggccgctatatctctctttcctcaagaaacacgagatccacgagaca
gcagtccgggtgttccgccgatacctcaagctgtgcccagaagatacagaagactacatc
gagtatttgactgctatcggtagactggacgaggctgctgtgaagctggcccatatagtc
aacaaggaggactttgtgtctaaacatgggaagtcgaaccatcagttgtggaatgaactc
tgtgaactcatatcaaagaatcctgataaagtgagatccttgaacgtagatgccattata
agaggcggcctgagaaggtatactgaccagttggggcatctgtggaattcacttgccgat
tactatgtccgaagtggcctctttgaacgggcgagagacatatatgaggaggcaatccaa
accgtgacaacagtgagagacttcacacaggtatttgatgcatatgcgcagtttgaggag
ctcagtcttggaaaggtgatggaggaaactgcaagcaaactcaaccccacagaggaagat
gacgtagagctggagctgcggctagcaaggtttgaacatcttatcgaacgcagattgctg
ctgctcaactctgtgctgctgagacaaaaccctcacaatgtccacgaatggctcaagcga
gtcaaactctacgaggggaaaccgcatgatataatcaacacatacacagaagcggtacag
actgtggagcctaagctggctgttggcaagcctcacacattgtgggtgtcgtttgccaag
ttctatgaggaaaacgggcagatagaggatgctcgggtggtcatggagaaagccactcta
gttccttatgtcaaggtagatgacctcgcctctgtttggtgtgagtggggcgagatggag
atacggcatgagaactatgatggtgctctgaaactgctacagagggctaccgtaatgccg
gcacgtaaagtggcctatcatgatgagacagagactgtacagatgagggtttacaagtca
cttaagctctggtccatgtacgctgacttagaggagagttttggcacattcaagtcttgt
aagtctgtgtacgacagaatcattgacctgaaaattgctactccccagatcatcatcaac
tatggactgttcctggaggaacataattactttgaagaagcattcagggcatatgaaaaa
gggattgctctcttcaaatggccgaacgtatatgacatatggaacacctatcttaccaag
ttcctgaatcgctacggtggcaccaaactggaaagggcgagagatttattcgaacagtgt
gtagaaaactgccctccgaagtttgctaaagctctctacctgctgtatgcaaaattggag
gaagatcatggtctagccagacatgccatggcagtttatgaacgagcaactgcagctgtt
ctaccagaagaaatgtttgagctgttcaatatatacataaagaaagcagcagagatctac
ggggtgccacagactcggcagatttacgagaaggcaatagatgtgctgcaagaggacaac
tgcagagagatgtgtctacgctttgctgaaatggaaacgaaactgggtgaaatcgaccga
gcgagagcgatatatgcacactgcagtcagatctgtgatccaagggttactgcagagttc
tggcagacttggaaagagttcgaggtccgccatggaaacgaggacacgatgagagaaatg
ttgaggataaaacgtagtgtgcaagcgacgtacaacacacaggtgaacatgatgtcggcc
cagatgttgtctgctgctagtaacgtgtcaggcactgtagcggacctggctccaggagcc
aaggatggcatgcggatgcttgaggccaaggcggcggaaaatgtgccgcaggtgaaagga
ggaaacatcctgtttgtccgaggggagacccagggacaggagagagacggcacagacacc
actagagtcgttaaccctgatgagatcaatattgacgaggatgatgaagatgtcaatgac
tcatctgaagatgaagatgaagaaatgccggtccagaaacaaatcattccatctgaagta
tttggtggcttgaaaaaggacgatgaagatgaatcaccctaa
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