Homalodisca vitripennis (glassy-winged sharpshooter): 124367330
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Entry
124367330 CDS
T09217
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124367330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124367330
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124367330
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124367330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Spectrin_Anc-1
PulA_N1
Motif
Other DBs
NCBI-GeneID:
124367330
NCBI-ProteinID:
XP_046680019
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Position
8:14264649..14302998
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AA seq
664 aa
AA seq
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MALIIEDGFYGEIERCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRL
RDQIKSWIASGEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKMDPAQ
KEREEISTWLVTSIDALNLQLDQFESEIESLLAGKKKRLDKDKQDRMDELKLKLDRHRHH
IRKLETLLRMLDNMSVEVIQIRRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEIELSG
VGLPSSATTDSNGTPTSLTSSPPPSPPLPLHNHSSDSSNEEKKKKEVDQLPTKVVVKPTA
VRASNSSIPLLNSNSKTTTPLTNNNNNKPVSHSTPNNSSPSSGHMNHHHPVVAPPPPPSS
NFAAVAAAPTQNASNKITPHAVENGGILPASRGESNQIPNTNSTGSLHHPATTESPHAMH
NNVSSAGVSSSPPSSVSSAPSPTPPTPPPPAPVPPPPTDHALSSLKSIAQQVIDRAGLEM
PPSDSSRGLFENKARESVTSEAHIPPLLGVAPLGPVPLQKEHQCQFQMMEAAFYHMPHPS
DSEKIRQYLPRNPCQTPSYYHQAPLAHSDTLEFFQRLSTETLFFIFYYMEGSKAQYLAAK
ALKKQSWRFHTKYMMWFQRHEEPKLINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLED
RDLN
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggccctaatcattgaggatggattctacggtgaaatcgagcggtgtctcaagaaagta
acagaaggcgtggagacgtttgaagacatttggcagaaagtccacaatgccacgaacagt
aaccagaaggaaaagtatgaggctgatctcaaaaaggaaatcaagaaactgcagaggcta
cgagatcagatcaagagctggatcgcctctggggagattaaggataagagtacgctcctt
gattaccggaaactcattgaaactcaaatggagaggtttaaggttgtagagagggaaacg
aaaaccaaagcgtactccaaagaggggttgggagctgcccagaaaatggatcctgcgcag
aaggagagagaagagatatcaacatggcttgtgacatcgatagatgctttaaatctccag
cttgaccagtttgagtcggagatcgagtcgctgttagcagggaagaagaagagactagac
aaagacaaacaagacaggatggatgaactgaagctgaagctggacaggcacaggcatcac
atacgaaagctagagaccctgctgaggatgctggataacatgtcggtggaagtcatccag
ataagaagaataaaagatgacgtagagtactacatcgagtcatcccaagagccagacttc
gaggagaacgagtacatttacgatgacatcatagggttagatgagatcgagctgtcgggt
gttggtttgccctcatcggcgacgacagacagcaacggcacccctacaagcctgacctca
tcgcctcctccgtccccccctctccccctccataatcattccagtgatagttctaatgaa
gagaagaaaaagaaggaagtcgatcaactacctactaaggtggtggtaaaacctactgca
gttagagccagcaatagcagtataccattgctcaactcaaacagtaaaacaacaacacct
ctgacaaacaacaacaacaacaagcctgtgtctcactctacgcccaacaacagctcaccc
tcgtcgggccatatgaaccaccaccatcctgtcgtcgccccgccaccgccaccatcgagt
aacttcgctgccgtcgccgccgcgcccactcaaaacgcttccaacaaaattacacctcat
gcggtggagaacggcggcatcctaccggcgagcagaggggagagcaatcaaatacccaac
accaactccacaggttccttgcaccacccggcgacgacagagtctccgcacgcaatgcac
aacaatgtcagctcggcaggggtgtccagttcccccccttcgtctgtgagcagtgctccg
tcaccgacacctcccacccctccccctcctgcccccgtgccaccacctcctacggaccac
gccctctcctcgctcaaatctatagcacagcaagtcatcgaccgagctggtctcgaaatg
cccccttcggactcgagtagaggactgtttgagaacaaagcgcgggagagtgtgacgtcg
gaagcccacatacctccactcctcggggtggcaccccttgggcctgtgccactacagaag
gagcaccagtgtcagttccagatgatggaggcagcgttctaccatatgcctcacccctcg
gactcagagaagattagacagtacttgccgcgcaacccctgccagactccttcctactat
caccaggctcctctggcacactcagatacgttggagttcttccagcgattgtcgacggaa
actctcttcttcatcttctactacatggaggggagcaaggcgcagtacctggcagcgaag
gcgctgaagaagcagagctggaggttccacaccaagtacatgatgtggttccaacgtcac
gaggagcccaagctgatcaatgaggagtatgagcaggggacatacatctactttgattac
gagaagtggggccagcggaagaaggagggctttacattcgaatacaagtacttagaggat
cgtgacctgaactga
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