Homalodisca vitripennis (glassy-winged sharpshooter): 124368310
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Entry
124368310 CDS
T09217
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvi03021
]
124368310
03036 Chromosome and associated proteins [BR:
hvi03036
]
124368310
Transcription machinery [BR:
hvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124368310
Chromosome and associated proteins [BR:
hvi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
124368310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
Tex_central_region
SH2
Spt6_S1
HHH_9
Tex_YqgF
HHH_3
OB_RRP5_4th
S1_RRP5
Tex_N
DUF2924
Motif
Other DBs
NCBI-GeneID:
124368310
NCBI-ProteinID:
XP_046681540
LinkDB
All DBs
Position
8:complement(107578460..107608980)
Genome browser
AA seq
1785 aa
AA seq
DB search
MINFKASWKLSFLFIVNFSVADDDEKLREELKDLIDDNPIDEDESEGEDSDASGGSKKRK
KSDDEDFDDRLEDEDYDLLEENLGVKVERKKRFKRLKRIEEDESGNEDADADEGEERDAI
ANELFEGSDHEVDDRDDDHESEQIHRSEADNYEGEGEEDSEDDYFIVDDDGRPIAEKRKK
RKPIFSDAALQEAQDIFGVDFDYEEFDKYGEEDYDEDDEDEDEYADEEGLEDTERRRKPK
KAAKKKQTRKSIFEIYEPSELKRGHFTDLDNEIRNTDVPERMQLRDIPVTPTTEGSDELD
KEADWIYKQAFCKTTISSQDMPTEVRDRQRRGPQMVGKIKKALDFMRNQHLEVPFIAFYR
KEYVQPELTINDLWRVYKFDAKWCQLRSRKLTLISLFEKMRDYQAEQLMKDLDATIPDGV
RIVRDEDIDRLRAVQTTEELKDVHLHFLLYYGHEVPAMQEAVRAKERAIEAEARRARRRE
EQGEDGGEDDVEEVDPPAPPPDTVKQAVRSGPYAMCRKAGIDAFAKRFGLTPDQFGENLR
DNYQRHEVEQESVAPLELAKEYVSSKFVTPEDALRAAKYMVAMQIARDPLVRNCVRETFF
ERAKIDISPTKRGLKEIDENHPCYSLKYVKGKPVRDLTADMFLKLTIAESDKLITMAISD
HIEGITTNSYLEEAKQLYYKDEFSKNVQDWNTLRVECVETALRKMLLPDLKKELRMHLLD
EAKESVLKACCRKLYNWIKVAPLTVDFGDEDDEEWDTSKGLRMMAIAYVPDYSQAAFACL
IAPDGECTDHLRLPHLLKRKNSYREDEKILKEADLLALRNFILTKKPHAVVVGGESRDAI
MVSTDIKDIVNTLVEDEQFPQIPCEIMDNEFAKVYANSIKGENDFRDYPMLLRQAISLAR
RMQDPLVEFSQLCTSDEEIMCLRYHPLQDHLNRDELLEALNLEFVNRTNEVGVDINAIVA
NVYSGNLVQFVCGLGPRKGAALIKLLKQTNQRLENRTQLVTACHMGPNVFINCVGFIKID
TNALGDSTEAYVEVLDGSRVHPQTYEWARKMAVDALEYDDEDANPAGALEEILEAPERLK
DLDLDAFAEELERQGFGNKSITLYDIRAELNHRYKDLRQPYQPPNSMEMFNMLTHESPET
FYIGKMIQATVTGITHRKPEGDQLDQANPVRKEDTGLWQCPFCLKNDFPELSEVWNHFDA
GGCPGQATGVRIRLDNGITGYIHIKNLSDKHVTDPEERVSRGQMIHCRITKIDVERFSID
ATSKSSDLLDKNHEWRPPKDPFYDHEAEAKDIKVEEDAKKIKQRQTYIKRVIVHPAFHNI
SFVEAEKIMANMEQGECIIRPSSKGADHLTVTWKVADGIYQHIDVREENKENAFSLGQSL
WIGNEEFEDLDEIIARHVNPMAAHARDLFSFRYYKDTEGGLKDKAEEFLKEEKKKNPQKI
HYIISVSKNYPGKFLLSYLPRNRCKHELITVTPDGFRFRGQTFDTVGMCFKWFKEHFRDP
IPGTPSTPRSGLTTNRATTPHHPFTPNVNINMNPETLHRVAQNMNPHMLHNLAQVASQTP
HYPTTPGGYTMPTYPNTPYTPTAQTPFMTPYHTPHHVTQTPRYGSQTPMGPPAAAPVFMH
TPSHRTTPSPSPTPPQQQFARSVTGSNMPSDPMDWRKAAEEWARLKQRENANLTPRSGTP
RQGGSTPSRYEDRRGTPRNNQTTRSPRGPPYKPSPHHGYEQSPRGYDNTKSPRQLPGSGP
YDPFGLGTKSPRYTASPRSTPRTINSPRSMIESSIGDATPLYDEN
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgattaatttcaaagcgtcttggaagttgtctttcttattcattgtaaatttttctgtt
gcagacgatgatgagaagctgagggaagaactcaaagatttgattgatgacaatcccatc
gatgaagatgaaagtgaaggggaggattcggacgcatcaggggggtcgaaaaaacggaaa
aaaagtgatgatgaagactttgacgaccgattggaagatgaggattatgatttgctggag
gagaacttgggcgtcaaagtcgaaagaaagaaaagattcaaaagactgaagagaatagaa
gaggatgagtccggcaatgaagatgcagatgccgatgaaggggaggaacgtgatgcaatt
gccaacgaattgtttgaaggctctgaccacgaagtggatgatagggatgatgatcacgaa
tctgaacaaatacaccgttcggaagcggacaactatgagggcgagggtgaagaggactct
gaggatgattacttcatcgtggatgatgatggcagacctatcgctgaaaaacggaagaaa
agaaaacccatatttagtgatgcagccctacaagaggcacaagatattttcggtgtggac
ttcgactatgaggagtttgacaagtatggggaagaggactacgatgaggatgatgaggat
gaagatgagtatgcagatgaagaaggattggaggacacagaacgaaggagaaagccaaag
aaagcagccaaaaagaagcagactaggaaatcaatatttgaaatttatgaacccagtgaa
ttgaagagaggtcatttcacagatctggataatgagatacgtaacaccgacgtaccggag
aggatgcagttgcgggatatcccggtgactccaactacagaaggctcggatgagctggac
aaggaggctgactggatatacaagcaagccttctgcaagactactatctccagccaggac
atgccgacggaagtccgagacaggcagagacgtgggccgcagatggtcggcaagatcaag
aaggcattagatttcatgcggaaccagcacctggaggtaccctttatcgccttctaccgc
aaggagtatgtgcaaccagagttgactatcaatgatctctggcgtgtttacaagtttgat
gctaagtggtgccaactgaggagtcgtaagctaacgctgatcagcctgtttgaaaagatg
agggattaccaggcagaacaactaatgaaagatctggatgcaactatacccgatggtgtg
cgaattgtcagggatgaagacattgacaggttacgagcagtgcagacaaccgaggagctg
aaggatgttcacctccactttctgctgtattacggccacgaggtgccagcgatgcaggag
gctgtgagagccaaggagagggcgattgaagcggaggcacgtagagcgcggcgtagggag
gagcagggggaggatggaggcgaggatgatgtggaagaagtggaccctcctgcacctccg
cccgacacagtcaaacaagctgtccgctccggcccctatgccatgtgtcgcaaggctggt
atagatgcattcgccaagaggtttggtctgactcctgaccagtttggcgagaacctccgt
gacaactaccagaggcatgaggtggaacaggagtctgtggcccctctggaactggcaaag
gaatacgtttccagcaagtttgtgacacctgaagatgcattgcgtgcagcaaagtacatg
gtcgcaatgcagattgcacgtgatccccttgtgcgcaattgtgtgagagaaactttcttt
gagagggcaaaaatagatatttcaccaaccaaaagaggattgaaagaaatcgatgaaaac
catccttgttacagtttgaaatatgtgaaagggaagccggtgcgtgatctcactgctgat
atgtttttgaaactgacgatagcagagagtgataagctgataacgatggccatcagtgac
cacatcgagggtatcacaactaactcttacttggaggaagccaaacaactgtattataag
gacgagttcagcaaaaacgtccaggactggaatacgttgcgtgtggagtgtgtggagact
gccctacgtaagatgttgttgcctgatctcaagaaagaactgcgcatgcacttgctggac
gaggccaaggagagtgtgttgaaggcgtgttgccgcaagctgtacaactggatcaaggtg
gcgcctctcaccgtcgactttggtgatgaagatgacgaagaatgggacaccagcaaggga
ctgcggatgatggctattgcatatgttccggactactcacaagctgcattcgcttgtctg
attgctccagatggagaatgtacagaccacctgcgacttccacatctactcaaacgcaag
aactcctatagggaagacgagaaaatacttaaggaagctgacttgctagccttgcgcaac
ttcatattgaccaagaaaccgcacgcggtggtggtgggaggagagtcacgagatgccatc
atggtgtctacggatatcaaggacattgtcaacacccttgtggaggacgagcagttccct
cagataccatgcgagatcatggacaacgagttcgccaaggtctacgccaactcaatcaaa
ggcgagaacgacttcagggactaccctatgcttctgcgacaggcgatatctctggctcgc
aggatgcaagacccactcgtggagttttcacagctatgtacatcggacgaggagataatg
tgtctacgctaccacccgctgcaggatcatctaaaccgggacgaactgctggaagcattg
aacctggagtttgtaaaccgcacaaacgaagttggtgtcgacataaatgctatagtggcg
aacgtgtacagcggcaacctggtgcagtttgtgtgcgggttggggccgcgtaagggagct
gctctcatcaaacttctcaaacagacaaaccagaggctggagaaccggacacaacttgtc
accgcatgtcacatgggtcccaatgtcttcatcaactgcgtcggcttcatcaagatagac
accaatgccttgggcgacagtactgaggcatatgtggaggtgttagacggctcacgagtg
cacccccagacatacgagtgggcccggaagatggccgtggatgcacttgagtatgatgat
gaggatgccaaccctgcaggagccctggaagagattctggaggctccagagcgactgaag
gacttggacttggatgcttttgctgaagaattagagagacagggctttggcaacaaaagc
atcacactgtacgacatcagagccgagttgaatcaccgctacaaggatctcaggcagcct
taccaacctcccaactcaatggaaatgttcaacatgctcacacacgagtcgccagaaact
ttctacatcgggaagatgatccaagccacggtcacaggaatcacgcacagaaaaccggag
ggtgaccagctagatcaggcgaaccctgtcaggaaagaggatacagggttgtggcagtgt
ccgttctgtcttaaaaacgactttcccgagctctcagaggtatggaaccatttcgacgcg
ggaggatgtccaggccaggcaactggcgtgaggatacggctggacaacggcatcaccggt
tacatccacatcaagaatctgtcagacaagcacgtgacagaccctgaggagagggtgagt
cgggggcagatgatacactgtcgtatcaccaagatagacgtagagcggttctccatagac
gccacctctaagagctcagatctcctcgacaagaaccatgaatggagacctccaaaagat
ccattttatgaccatgaggctgaggcgaaggacatcaaagttgaggaggatgctaagaag
ataaagcagcgacagacgtatatcaaaagggtcatagtgcaccctgcattccacaacatt
tcctttgtagaggcagagaagatcatggctaatatggaacagggagagtgcataatacga
ccttccagtaagggagctgatcacctgacggtgacatggaaggtggcggacgggatctac
cagcacatcgacgtgcgtgaagagaacaaggagaatgctttctcacttggccagtcgttg
tggattggcaacgaagagtttgaggatctggacgagatcatcgccaggcatgtcaacccc
atggcggcgcacgctagagacctgttctcattccgctactacaaggatactgaaggcggt
cttaaagataaggcagaagagttcctaaaggaggagaagaagaagaatcctcagaaaata
cactatattatatctgtctctaagaactacccaggaaaatttctgttgtcatacctacct
cggaaccgttgtaaacacgaactgatcacggtcacaccggatggtttccggttcagaggg
cagacgttcgatacagtcgggatgtgcttcaagtggttcaaagaacactttagggatccc
attccgggcactcctagcactcccaggtccgggttgacaacgaaccgagcgaccacacct
caccatccgttcactccaaatgtcaacatcaacatgaatccagagactctgcacagggtg
gctcaaaacatgaaccctcacatgttgcacaacctggctcaggtggccagccagactccc
cactaccccaccacccccggtggctacaccatgcccacctaccccaacactccgtataca
ccaacagcccagacgccgttcatgacaccgtaccacacgccccaccatgtgacacagact
ccgcggtacggcagccagacccccatggggcctcctgccgctgcacctgtgttcatgcac
acccccagccatcgcactacaccgtccccctcgccaacgcccccccaacagcagttcgct
aggtccgtcactgggagcaacatgccgtcagaccctatggactggcgcaaggcagctgag
gagtgggcgaggctgaagcagcgagagaacgccaacttaacacctcgtagcggaacacct
cgccagggagggtcaacgccaagcagatacgaggaccgaagaggcacgccacgcaacaac
cagactacccggtccccacgcggtcctccctacaagccttcccctcaccacggttacgag
cagtcaccacgtgggtacgataataccaagtccccacgacagctgccagggtcaggacca
tatgaccccttcggcctaggcaccaagtccccacgctacacggcgtcaccccggtccact
ccccgtaccatcaacagtccccgttcaatgatagagagctctattggtgacgccacccca
ctctacgatgagaattaa
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integrated database retrieval system
