Homalodisca vitripennis (glassy-winged sharpshooter): 124369048
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Entry
124369048 CDS
T09217
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03013
Nucleocytoplasmic transport
hvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124369048
03015 mRNA surveillance pathway
124369048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124369048
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124369048
mRNA cycle factors
P-body specific factors
124369048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124369048
NCBI-ProteinID:
XP_046682700
LinkDB
All DBs
Position
X:59709557..59838835
Genome browser
AA seq
1276 aa
AA seq
DB search
MMENEEENSNIVEEEMINNICNTIQNDEDEDYIKQSADELSLSKVIINNSDYIEEISVKE
QSALQHFDIAEEIDKIPFNDQKTKDENTELTLFSNYKNTAKENATSEQSTDSSCVDYKEY
PDSIKKEQADENEKAVLLSYISDVEQRAKSKLKLRERNHAPQRPDDNAIAKLDSSLKKNT
AFVRKLRNFTAPQLDSLMKDMSGLNLSKYTSEVASALVEAKLKLNDVPAAVALCSEMHNT
YSEFSKVLWDHWAKTLSLKKDEKIVNPSKLRVDLRFYGDLITSGIFQFKEALPLLGNILT
VLTTSDREEHNNISIILSFCKHCGEDYAGLLPKAMRILSEKFNIAVPRSSMLPPEKQKNV
RSLLKDYYGSLCKHLLKEHSEMQAFERKNRRILQTKGELSTERKERGEALAALFQKLFNG
TLNFAEALDEDVPELPEESLASRSNTFADEFGPFRESSKGDGDLLLMGGGLDSDDVTSLS
IWEDEETQRFYTEFPNLKDYLPNFKIIKQEKTSVASMTEENLDEDLKEEELEEDKKEEET
VAEAIEEYEENDNNTNSSNKILLDAFLNLLPNCVNREMIDNAAIEFLMYHNTKHHRKKLV
KVLFGVPRTRLDLLPFYARLVAILNPLLPDIATDLSVLLKHDFKYHIRKKDQINIESKLK
VIRFISELVKFDLYSKIEGLYCLKVLLHDFTHHHIEMACTMLETCGRFFFRSPDTHQRTK
VYLEQIMRMKTGKTLDSRYVTMIENAYYFVNPPELPVTRVKERPIMHEFIRHILYQDLTR
PAEAPKVLDFMRRLNWRDQQIFNYAIKCLTQAWNVPYPNIKDLANLLAGLVEYQESVAAH
VVDGVLEDIRIGLEANTKNLNQRRVAMVKYLGELYNYRMVESNDIFKILYSLIAFGVATD
HDHPSPWDPPEHLFRIRLVCTLLDTCGQYFNHGPSKVKLDYFFVYFQHYFWFKYSSPVWT
VENPFPTNMNHMFRDCLTNLRPNIVLAEDYQQAKDTLEQITIKMRTKWNPIISNHQNDGD
DLDTILEAYFEDGEDGEDKELQEEESFSNEEDDSGDEKEDRTMHIRREELDDAHQQPTFI
DRDIDGIEDRAIDSDLDSDDNSDNQAPNSRCHSPDDDDFLAAFDKMVSDNLQDRMRDNVK
PQFVDIPVPLHVKTNAKKTYEQLQEPETEQKETVNFVLMLRKGNKQQYKNVAVPTDSELA
LNLRSQEKAERVEMEKVKRLTLDINDRLEEEDYQDQLSQTQKPSMVNLNRERRHKYQHPK
GAPDADLIFGRKKIQR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaatgaggaggaaaattcaaatattgttgaagaggaaatgataaacaatata
tgtaatacaatccagaatgatgaagatgaagactacataaaacagagtgcagatgaattg
tctctgtcaaaagtaattatcaataacagtgattatattgaagaaataagtgtaaaagaa
caatcagcattgcaacactttgatatagccgaagaaattgacaaaattccttttaatgac
cagaaaacaaaagatgaaaatacagagcttacattgttttcaaattataaaaatactgct
aaagaaaatgctacttcggagcaatcaactgatagttcatgtgttgactacaaagaatat
ccagacagcattaaaaaagaacaagctgatgaaaatgagaaggctgttcttctgtcttat
atcagtgatgttgaacaacgagcaaaatcaaagctcaagttacgggaacggaaccatgct
cctcaaagacctgatgacaatgcaatagctaaacttgattccagtctgaagaaaaacact
gcttttgttagaaaattgcgtaatttcacagccccacagctggacagtctgatgaaagat
atgtctggtctgaatctgtccaagtatacaagtgaagtagcgtcagctctagttgaggcc
aagctgaaactgaatgatgtacccgctgcagttgctctctgtagtgaaatgcacaatact
tattcagaattctcaaaagtactatgggatcattgggcaaaaaccctttcgctaaagaaa
gatgaaaagattgtgaaccccagtaagctaagagtggacctgagattctatggagacctc
atcacatcgggaatattccaatttaaggaagccctgcccctactgggaaatatattgact
gttcttaccacatctgatcgagaagagcacaacaatataagcataatactcagcttttgc
aaacactgtggagaggactatgcaggtttgttgccaaaagccatgagaattttatcagag
aaatttaatatagcagttcctcgcagctcaatgttgcctccagaaaaacagaaaaatgtc
cgttcacttctaaaagattactatggatctctatgcaaacatctgctgaaggagcatagt
gaaatgcaggcttttgaaaggaaaaatcggcgaatcctacagaccaagggtgagcttagt
actgaaagaaaagaaagaggagaggctttagcggcactgtttcaaaagttgttcaatgga
acactgaactttgcagaggctctggatgaggatgtccctgaacttccagaggaaagtctt
gcatcaaggtccaacacttttgctgatgagttcggcccttttagagagtctagcaaagga
gatggagacctgttgttaatgggtgggggattagactcggatgatgtaacctcactttct
atttgggaggatgaggaaacacaacgcttctacactgagtttcccaatctgaaagattac
ctgccgaactttaagatcataaaacaagagaagacatcagttgcttcgatgactgaagaa
aatttagacgaagacctaaaagaagaagaacttgaagaagataagaaagaagaagaaaca
gtagctgaagcaatcgaagaatatgaagaaaatgataacaatacaaactcaagtaataaa
attttacttgacgcatttttgaatcttctcccaaactgtgtcaatagagaaatgatcgac
aatgctgctattgaattcttgatgtatcacaataccaagcaccaccggaagaagcttgtc
aaggtcctgtttggtgtgccaagaactaggttggacttgctgccgttctatgcccggctt
gttgctattctgaacccattgttgcctgatatagcaacagaccttagtgtgctcttgaaa
catgacttcaaataccatattaggaagaaggatcaaataaatattgaatctaaactgaag
gtcataagatttataagtgaacttgtaaaatttgacctgtactctaaaattgaaggattg
tactgtcttaaagtcttacttcatgactttacacatcatcacattgaaatggcttgtact
atgctggagacatgtggtcgctttttcttccgaagtccagacactcatcaaagaactaaa
gtgtatttggaacaaatcatgagaatgaagacaggtaaaactcttgactcacggtatgtg
actatgattgaaaatgcatattactttgtgaatccacctgagctaccagtgacccgcgtg
aaagagagacctatcatgcatgagttcatacgccacatcctctatcaggatttgacaagg
cctgcagaagctcccaaagtgcttgatttcatgaggaggttaaactggagagaccaacag
atcttcaactatgcaatcaaatgtttaactcaggcttggaatgtgccatacccgaatatc
aaggatctagcaaatctacttgctgggcttgttgaataccaggagtctgtagctgctcat
gttgtagatggagttcttgaagacattaggataggtttggaagctaacacaaaaaatcta
aatcagagaagagtagctatggtgaaatacttgggagaactgtataactatcgcatggtg
gaaagcaatgacatattcaagattttgtactcactgattgcatttggagtagccacagat
catgatcatccatctccttgggatcctccggaacacctgtttcgcatccgtctagtctgc
actttactcgatacttgtgggcagtactttaaccatggaccaagcaaagtgaaacttgat
tatttctttgtatattttcagcattatttctggttcaagtattcaagtcctgtatggact
gttgaaaaccctttccctacaaatatgaaccacatgtttcgagactgtttgacaaactta
aggccaaacattgtattggcagaggattaccagcaggctaaagacactttggaacaaatc
accatcaagatgagaaccaaatggaatccaattatctccaaccaccagaacgatggtgat
gatttggatactattttggaagcatattttgaagatggtgaggatggggaagataaagag
ttgcaagaagaagagtcattctccaacgaagaagatgattcaggagatgaaaaagaagac
cgaactatgcatattcgtagagaagaactagatgatgctcatcagcaaccaactttcatc
gatcgagacattgatggtattgaagatcgtgctattgattcagacctggattcagatgat
aactcggacaatcaagcaccaaactcaaggtgtcatagccccgacgatgatgatttcctg
gcagcttttgacaaaatggtgtctgacaacctacaagatcgaatgagagacaatgtaaaa
ccccagtttgttgatatcccagttcctctccatgtgaaaacaaatgccaaaaagacatac
gaacagttacaagagccagagacagagcaaaaagaaactgttaattttgttctgatgttg
agaaaaggaaataaacagcagtataagaacgtagctgttcccacagactctgaattggct
cttaatctgcgttcacaggagaaggcggaaagagtcgagatggaaaaggtgaagagatta
acacttgatattaatgatcgccttgaagaagaagattatcaggaccaactgtcacagacg
cagaaaccctcaatggttaatcttaacagagaaagaaggcataaatatcaacacccaaag
ggagccccagatgctgatcttatttttggccggaaaaaaatacaaagatag
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