Homalodisca vitripennis (glassy-winged sharpshooter): 124372060
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Entry
124372060 CDS
T09217
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124372060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvi03041
]
124372060
Spliceosome [BR:
hvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124372060
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
PRP4
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_SCAP
Ge1_WD40
WD40_like
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
WD_LRWD1
Nbas_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
124372060
NCBI-ProteinID:
XP_046686381
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All DBs
Position
1:complement(139781891..139801863)
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AA seq
517 aa
AA seq
DB search
MSDDEDLLYVKKQNTIHYGSIEEQERLRLQSTQLVPPGEESMEELPSSPTNDQVGSGPAG
NVHISDEYMDLEDEMSKDKQALLEEFERRKKARQVNVSTDDSEVKKNLRQLGEPICLFGE
GPAERRSRLRDLLSRLGEDAIQRKQEEEEERIQQEKDQETTWYHEGPDILKDSRLWIAEY
SLPRARQRLLAAHEEAQLPEATVTARKQELQKFITSLTIYCSQIGDTRPLSYCNFSPDSS
MLATASWSGLCKLWSVPDCELVRTFKGHTCNVGAIVFHPRVGQEETLCALASCAVDGSVK
LWKLDSEDPLADIEGHEPHRVSRIEFHPSGRFLGTCCFDHSWRLWDLEVGQEVLHQEGHG
KPVYCISFQSDGSVAATGGMDAFGRVWDLRTGRCIMFMEGHLKAVYGIDFSPDGYHIATG
SEDNTCRVWDLRKRACVYTIPAHMNLLSHVKYQRSGGHFLITSSYDNTAKVWSNKTWQSL
KTLQGHDGKVMCLDITPDSKYIATCSYDRTFKLWAPE
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgaggatcttctgtatgtgaaaaaacagaacactattcactatggctct
atcgaggaacaagagcgtttgcgattacaatcaacccaactggttccaccaggagaagag
agtatggaagagctccccagttctccaacaaatgatcaagttggatctggtcctgcagga
aatgtccatatttctgatgagtatatggatctggaagatgaaatgtccaaagataagcaa
gctttattggaagagtttgagcgaaggaagaaagcacggcaagtgaatgtttcaaccgat
gattctgaagttaaaaagaatctccgtcaattgggtgaacctatttgtctgttcggagag
ggtcctgctgagaggaggagccgtttaagggatttgttatccaggctaggagaggatgct
atacagaggaaacaagaggaagaagaggagaggatccagcaggagaaggatcaagagact
acttggtaccatgagggtccggacatattaaaagattctcgactttggattgcagagtac
tctctaccgagggcgagacagcggctgctcgcagcccatgaggaggcccagctaccagaa
gccactgtgactgccagaaaacaggaactgcagaaattcattacttcgctcaccatctac
tgcagtcagattggggacacccggcctctgtcatactgcaacttcagtcctgactcctcc
atgctggctactgcctcctggagtggattatgcaaactttggtctgttcccgactgtgaa
ctggtccgcacgtttaagggccacacctgtaatgtgggcgcaattgtgttccatccacga
gttgggcaggaagaaaccctgtgtgcgctagcctcgtgtgcagttgacgggtcagtcaaa
ctctggaaactggacagtgaggacccactggcagacattgaaggccatgaaccacataga
gtttcccggatagagttccatccctccggccgtttcctgggcacctgctgcttcgaccat
tcttggcgtttgtgggacctggaggtgggccaggaggtgctccaccaggagggtcatggc
aaaccagtctactgcatctcttttcagtctgatggctcagttgccgccactggaggaatg
gatgcatttggtcgtgtgtgggacctaagaacaggccgctgcatcatgttcatggaaggt
cacctcaaagctgtctatgggattgacttctcaccagatgggtatcacatagcaacgggc
agtgaggacaatacttgtagagtatgggacttgcgtaaacgagcctgtgtctacacaata
ccagcacacatgaatctgctgagtcatgtgaagtatcagaggtcaggaggacacttcctc
atcacttcctcttatgataacactgccaaggtttggtccaacaagacttggcagtcactc
aaaactctgcaaggtcacgatggcaaggttatgtgtcttgacatcaccccagactccaag
tatattgctacctgttcatatgaccggacatttaagctatgggcacctgaataa
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