Homalodisca vitripennis (glassy-winged sharpshooter): 124373548
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Entry
124373548 CDS
T09217
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124373548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124373548
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124373548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_HPS5
WD_LRWD1
Tricorn_2nd
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
124373548
NCBI-ProteinID:
XP_046687865
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MNNVKMFLAHKEAIRGISFSPSDSKFATCSDDGTIKIWDFQRCQEERTLRGHGADVKCVH
WHPQKGLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNNNGNWLVTASRDHL
LKLFDVRNLSSEVQTFRGHKKESSSVAWHPYHEGLFCSGGSDGAILFWHVGADKEVGAIE
QAHDSIVWTLAWHPLGHILCSGSNDHSSKFWTRNRPGDLMRDKYNLNTLPANMSGLDENE
IDDLSVIPGMGPEDKVETINPASDNSGAIPGLDIDSTDEKVKVVLKKVPYSKPIPKNFQA
HWNHAAVGDDDKDGFDPIELINQLIVNQPGVIPLAEIEPESLIIYGKQIDLKPTDDLTLA
IKKGSEAFARFINSGAVEELNDVRPYMDLSDDESKPASSTPVPDNENQDSTSADHEDSWQ
NSNRSEDTQQSQSQQPLLGSQDQDMRHLLMQPPPSFPGLEEQRLRPPPPLPSPQQGEMFR
SMAPPEPFRPPDNFRQGFPHDIQNQNRDFQRPMPSREFNRTPDFREDMYRGPGEPFRPDF
GMRGRQDRSPPPFRGRNQGFINDQEDTRSSFPEDQDMRASFGNGDYDDDGDGDGDQWNNE
ERFRDSYDWNDEGMDEDEPMDEDYRNGDRRYQQQSYQQKKFPRGPRSRGSPRGGRGMDRG
RRMRGRGRGGSRGGGFRPRGRNPRR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgtcaagatgttcttagcccacaaggaggcaatccgaggcatcagtttcagt
ccaagtgatagtaagtttgccacctgctcggatgacggaacgattaaaatttgggacttc
caacgctgtcaagaagaaaggacactaagaggtcacggagcagacgttaaatgtgtccac
tggcaccctcagaagggccttgtcatctctggcagcaaggataaccaacagcccgtcaaa
ctgtgggatcccaagactgggcagtcgctcgctactttacatgcgcacaagtcaacggtt
atggacgtcaagtggaacaacaatggcaactggctggtaacggcgtccagggaccactta
ctcaagctgttcgacgtgcggaacttgtcatccgaggtgcagacattccgtggccacaag
aaggagagcagctctgtcgcctggcatccgtaccacgaagggttgttctgcagcgggggc
tcggacggagccatactcttctggcatgtgggagctgacaaggaggtgggagcgatagaa
caagcgcatgacagcattgtgtggactctggcgtggcacccgctcggtcacatcttgtgt
tcaggaagtaacgaccattcgagcaagttctggacacgcaatcgacctggcgacctcatg
agggacaagtacaacctcaacacactgcccgccaacatgtcaggcctcgacgagaacgaa
atcgatgacctgagtgtgatacctggcatgggtccagaggacaaagttgagaccatcaac
cctgcctctgacaactctggagctatccccggtctggacatcgattctacagatgagaaa
gtcaaagttgttctgaagaaggtgccgtattctaaaccaatcccgaagaactttcaagcc
cattggaaccacgctgctgttggtgatgatgataaggatggatttgaccccatcgaactc
atcaatcagttgatcgtaaatcaacctggagttatcccgttggcagaaatcgagccagaa
agtttgatcatttacgggaaacaaattgacctgaaacctacggacgacctgacgttagcc
atcaagaagggctcagaagcttttgctcggttcatcaattcgggtgcagtggaggagctg
aacgatgtcaggccttacatggacctgagtgacgacgagtccaaacctgcgtcctcaacc
cctgtccccgacaacgagaaccaagactccacttctgcggaccatgaagattcttggcag
aacagcaaccgaagtgaagacactcagcagtcccagtcacagcagcctctgttaggttct
caggatcaagacatgaggcatctgttgatgcaacctcccccatcgttcccgggtcttgag
gagcagaggctacgacctccacctcctctaccttcaccccaacaaggagaaatgttccgc
tccatggcgccaccagaaccattccgtcctccagacaacttccggcaaggcttcccacac
gatatccagaatcagaatagagacttccagcgtccgatgccgagcagagagttcaacagg
acgccggacttcagagaggacatgtacagaggtcctggggagccgtttaggcctgacttc
ggaatgagaggcagacaagatcgatccccaccgcctttccgggggaggaaccaagggttc
atcaacgatcaggaggacaccaggtcgagctttcccgaggatcaggatatgcgggcgtcc
tttgggaacggcgattatgacgacgatggtgatggagacggtgatcagtggaacaatgag
gaacgtttcagagacagttacgactggaatgacgagggcatggacgaagatgaaccgatg
gatgaagattatcgtaatggagacaggaggtaccagcaacagtcttaccagcagaagaag
ttccccagaggtccgagaagtagaggtagtcctcgtggcggcagagggatggatagggga
aggagaatgagggggaggggaagaggggggtcaaggggtggtgggttcagaccgagaggg
cgaaaccctcgcagatag
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