Vreelandella venusta MA-ZP17-13: EI420_07600
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Entry
EI420_07600 CDS
T05892
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hvn
Vreelandella venusta MA-ZP17-13
Pathway
hvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI420_07600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvn03021
]
EI420_07600
03019 Messenger RNA biogenesis [BR:
hvn03019
]
EI420_07600
Transcription machinery [BR:
hvn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EI420_07600
Messenger RNA biogenesis [BR:
hvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EI420_07600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
ABC_tran
AAA_16
AAA
AAA_22
NACHT
AAA_25
nSTAND_NTPase5
NPHP3_N
AAA_19
ATPase_2
AAA_24
cobW
AAA_30
AAA_23
NB-ARC
nSTAND3
Spore_III_AA
ResIII
Rad17
AAA_18
Viral_helicase1
AAA_17
NTPase_1
SRPRB
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
AZM95557
UniProt:
A0ABX2BFE0
LinkDB
All DBs
Position
1625112..1626068
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AA seq
318 aa
AA seq
DB search
MARKTLSLKTKRQLDAKPADEVESPFPDDPEKRFLNGVAIHPSPRIVLELGSSQRSVRAM
DLITPIGMGQRGLIVAPPGSGKTTLLKHICQAVADAYPDIKLYALLIDERPEEVTDFKRS
VSAEVHASSSDESYSNHVRLADKLLETARKQAGEGHDVMIVIDSLTRLSRVHNAEQRGNG
RTMSGGLDSRAMEIPRKLFGAARKIENGGSLTILATVLVDTGSRMDQVIFEEFKGTGNME
IVLSREVANQRIFPAIDIAKSSTRREELFIDAKDIEKVRALRRALTHLKPVEGAQKLLAL
LDKYPTNAELLDAFLPAS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaaaaacactcagtctgaaaacgaaaaggcagctagatgccaagcccgccgat
gaagttgaaagtccatttcctgatgatcccgaaaaacgttttttaaatggcgtggcgatt
catcctagccctcgcattgttttagagcttggctcttcgcagcgtagtgtgcgggcgatg
gatttgattacacctattgggatggggcagcgcgggttgattgttgcgccgccgggttct
ggcaaaacgacgttgttaaaacatatctgtcaggccgtggcagacgcgtatcctgacata
aagctgtatgccttgctgattgatgagcgccctgaagaagtgaccgattttaagcgcagt
gtgtcggcagaagtccatgcctcatcttcagacgaaagctactcaaaccatgtgcgtttg
gcagataaacttcttgagacggcgcgtaagcaggcaggcgagggtcatgatgtgatgatt
gtgatcgattcgcttaccagactctcacgggtgcataatgccgagcagcgcggcaatggt
cgtaccatgtcgggtgggttggatagccgtgcgatggaaataccacgcaaactgtttggc
gctgcgagaaagatcgaaaacggtgggtcgctcaccattctggccaccgtactggtggat
accggaagccgtatggatcaggtgatttttgaggagtttaagggcacgggcaatatggaa
atcgtgctgtcacgggaagtagcgaatcaacggattttcccggcgatagatattgccaaa
agcagcacccgccgagaagagttatttattgatgcgaaagatattgaaaaagtacgcgca
ttgcgtcgagcgttgacacatcttaagccagtagaaggcgcgcagaaactgctagcgtta
ttggataaatatccaaccaatgccgagctgttagatgcatttttacccgcctcgtaa
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