Vreelandella venusta: EI420_08095
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Entry
EI420_08095 CDS
T05892
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hvn
Vreelandella venusta
Pathway
hvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EI420_08095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvn03400
]
EI420_08095
Enzymes [BR:
hvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EI420_08095
DNA repair and recombination proteins [BR:
hvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EI420_08095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_22
AAA_30
MalF_P2
Motif
Other DBs
NCBI-ProteinID:
AZM95648
LinkDB
All DBs
Position
complement(1720445..1723939)
Genome browser
AA seq
1164 aa
AA seq
DB search
MYDPDSVSAQNDTVTMSSFSLLEPPQPKGIRDTLYLTAPPGSATALALAQVALSAPLLVI
TPNTASAQHLEQDLAFYSNVPVLPFPDWETLPYDSFSPHQDIISSRLRTLRLLQDGVRGI
VLVPINTLMQRLSPVSYIAGRVMTLKAGATLNRETFRESLSRAGYRAVETVYEPGEYAMR
GAIIDLFAMGMDEPIRIDLFDDEIDTLRHFDPGNQRSTNKVDVIELLPAHEYSLSRSAIA
CFREQFETLFDVDPRQCPLYNDALKAIPSPGLEQYLPLFFEETASLFEHVTDDTRVALLP
GVFEAAEQHWQSIESRYENLRVDPTRPLLPPARAFIPVNEVFSAIKARPRIELTEDNTQR
HALQPKAQALPSLAINARAKNPLNELATFLDEQHATRVLFVAESRGRREALEEVLAPLKL
NLPHIDSFQGFLSSTDHIAITESLVGSGLWLTEPNVAVISETELFGDVVRQSRRREKATD
DNELAVRHLSELREGAPVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDS
LHLISRYSGADDELAPLHRLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQEGFVYDT
PGDEYVRFSASFPFEETPDQQAAIEAVINDMVSPQPMDRVVCGDVGFGKTEVAMRAAFLA
VQTGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLISRFTSGKEMTQTLESIKNGQTD
IVIGTHKLLSKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNM
AMSGIRDLSIIATPPARRLSVKTFVQQRDDSVIKEALLREILRGGQVYFLHNEVKTIENT
AQQIRELVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILI
ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTL
ASHDMEIRGAGELLGDEQSGQMETIGYSLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEIS
LNLPALIPDDYLHDVQQRLVMYKRIANTQSDAELKELQVELIDRFGLLPQPLKNLIRQTR
LRQRAEQLGVARIEAGENRGRVLFNSTTQVDPLTLVTLIQKSPQHYRLDGSDTLRFEFPM
ETTEQRFDKVEALLTTLNQKVAAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgtatgatccagattccgtttcagcacaaaacgataccgtgactatgtcctctttctct
ctgctcgaaccaccccagcccaaagggattcgcgatacgctttacctgacagcgccgccg
ggcagtgcaactgccctggctctggctcaggttgcgctaagcgcaccattattggtgatt
acgccgaacactgccagtgcgcagcacctggaacaggatctggcgttctatagcaatgtt
cccgtgctaccttttccagattgggaaacgctgccttatgacagcttctccccgcatcag
gatatcatctcgtcacgcctacgcacgctgcgcttactgcaggatggcgttcgcggcatt
gtgctggtgccaatcaatacgctgatgcagcgcctatctcccgtatcatacattgctggg
cgcgttatgacgctaaaagcgggcgctacgctaaatcgggaaacatttcgcgaatcgcta
tcgcgggcgggttatcgtgccgttgaaacggtctacgagcctggcgaatacgccatgcgc
ggcgcaatcatcgaccttttcgccatgggcatggatgagccaattcgtatcgatttgttc
gatgacgaaatcgatacgctacgccattttgaccctggcaatcagcgctctaccaataaa
gttgatgtgattgagctactcccagcccatgagtactcactaagccgcagcgccattgct
tgttttcgagaacagtttgagacgctttttgatgttgatccacgccagtgccctctttat
aacgatgcactgaaagcaattccctccccgggtctagagcaatatttgccactgttcttc
gaagaaaccgcttctttatttgagcatgttaccgatgacacccgtgtggcactactgcct
ggggtattcgaagccgctgagcagcactggcagtctattgagtcacgctatgagaatcta
agggttgatccaacacgccctctgttaccccccgctcgcgcgtttatccccgttaatgag
gttttttcagcgatcaaagctcgcccccgaatcgagctaaccgaagacaacacgcaacgc
catgccctgcagccaaaagcccaagcactcccctcgctggctattaacgctcgagccaaa
aacccccttaacgaactggctacttttctggatgagcagcacgctacacgggtactgttt
gttgccgagtcacggggacgcagagaagcgttggaagaagtactggcgccgcttaaatta
aacctgccccatatcgacagcttccagggctttttaagcagtactgatcacattgccatc
actgagagcttggtaggtagcggcttgtggcttaccgagccgaacgtcgccgttatcagc
gagactgaattatttggcgatgtagtacgccagagcagacggcgagaaaaagccaccgac
gacaacgaattggccgtgcgtcatctatcggaattacgagaaggcgcaccggttgttcac
caagcacacggcgtcggccgctacctggggctggaaacccttgaagctggcggtcaagct
aacgaattcctggcgctttcatatgccgacggtgccaagctttatgttccagtcgatagc
ttgcatcttatctctcgctatagcggcgccgatgacgaactcgccccgctgcaccgacta
ggctcagatcagtgggaaaaagcacgccgtaaagcggctgagaaaatccgcgacactgcc
gccgagctgctcgacatttatgctcggagagaggcccaggaagggttcgtttatgatacg
ccgggcgatgaatatgttcgcttctctgccagcttcccgtttgaagaaacccctgaccag
caggcagccattgaagcagtgataaacgacatggtctctccgcagcccatggatcgcgtc
gtgtgtggcgatgtaggctttggtaagaccgaagtcgccatgcgtgccgccttcctggcc
gttcagaccggtcgccaggtagtggtgcttgtgcccaccacactgttagctcgccagcac
tttgaaaacttccgcgaccgctttgccgacactgctgtgaatattagccttatttcacgc
tttactagcggcaaagaaatgacgcaaaccttggaaagcatcaaaaatggccaaaccgat
atcgtaatcggcacccacaaactgctatctaaaagcgttgagctgcccaaaatggggctt
ttaattatcgatgaagagcaccgctttggggtcgcgcagaaagagaaactcaaaacgctg
cgcgccgaaatcgacattctgacgcttaccgcaacaccgattccgcgcaccttgaatatg
gccatgagcggcatccgagacctctcaattattgccaccccgcctgcgcggcgtttatcg
gtcaaaacctttgtgcaacagcgagatgacagcgtcattaaagaggcgctgctgcgtgaa
atattacgcggcggacaagtctacttcttgcataacgaagttaaaacgattgaaaacact
gcccaacaaatccgcgaactggtgccagaagcgcgggttgctgttgctcacggccaatta
cccgagcgcagccttgagcgggtaatgtcagacttctatcatcgccgcttcaatgtgcta
gtgtgctctaccatcatcgaaactggcattgatgtgcccagcgccaacacgattctgatt
gagcgcgccgacaagtttggcctggcccagctacaccagctgcgtggccgggttgggcgc
agccaccatcaagcatatgcttacctactaacacctccccccaaggcaatgacacgggat
gccgtgaaacgcctggaagcgattagtgcttctgacgatctcggcgctggtttcactcta
gcaagccacgacatggaaatacgtggcgcaggcgagctgttaggcgacgagcagagtggc
caaatggaaactatcggctactcgctttacatggaaatgctagatcgcgccgtaaaggcg
atccgtgcaggcaaaacacctaatattgatgcccccttcaacactggcgtcgagattagc
ctcaacctgccagcgttgattccagatgactatcttcacgacgtacagcagcgcctggtg
atgtataagcgtatcgccaatacccagagcgacgctgagcttaaggaactacaagtcgag
cttattgatcgctttggactccttcctcagcccttgaagaacctgatacgccagaccaga
ctccgccagcgcgctgaacaactaggcgtagcgcgtattgaagccggtgaaaaccgtgga
cgagttcttttcaacagcacaactcaggtcgacccattaacgcttgttaccctcattcaa
aaatcgccacagcactaccgattggatggctcagacactttacgatttgaattcccaatg
gaaactaccgaacagcgttttgacaaagtcgaagctttgctgacaacactcaatcaaaaa
gtagcggcggcgtga
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