Vreelandella venusta: EI420_08730
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Entry
EI420_08730 CDS
T05892
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hvn
Vreelandella venusta
Pathway
hvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI420_08730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvn03019
]
EI420_08730
Enzymes [BR:
hvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI420_08730
Messenger RNA biogenesis [BR:
hvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI420_08730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
Gag_p24
Sacchrp_dh_NADP
FANCF
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AZM95762
UniProt:
A0AAP9ZNR7
LinkDB
All DBs
Position
complement(1844929..1846182)
Genome browser
AA seq
417 aa
AA seq
DB search
MSFSELGLHDDLLRAVTAQGYTQPTPIQQKAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLANGKRPGKRQVRALVLTPTRELAAQVGESVTAYGKHLSLRSHIIFGGVGQQPQVDAL
KAGLDVLVATPGRLLDLHQQGHVDLSAVEILVLDEADRMLDMGFIHDIKRLLRLVPKQRQ
NLLFSATFSNEIQLLAQQLLNNPALIEVAPRNTTAEKIEQTIYRVDRDKKRELLAHLIQQ
HGWFQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEHGLLSGIER
LIKQNLPKRIEPGFEPDPNAKPEPIENGRRGQKQPRAKRKPEGQANTGGERRRRARR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggtttgcacgacgatttactacgcgcggttaccgcgcagggc
tatacgcagcctacccctattcaacaaaaagctatccccgttgtacttgaaggtcgtgac
atgctcgccagtgcacaaactggtacaggcaaaactgctggctttacattgcccatgtta
cagcggctagcgaatggcaagcgccccggcaaacgccaagtacgcgcgctggtgctcacg
cctacgcgcgagcttgctgcccaggtaggcgaaagcgtaaccgcttacggcaagcacctc
tctttacgctcgcatattattttcggcggcgttggccaacagccacaagttgatgcactc
aaagcggggcttgatgtgctagttgccacgccaggccggctgctagatttacatcagcaa
ggccatgtcgatctatcagccgtcgaaatcctggtgctcgatgaagctgatcgtatgctc
gacatgggattcatccatgacattaagcgtctgttgcgtttagtgccgaaacagcgtcaa
aacctactattctcggcaacattctccaacgaaatacagttactggcacaacagttactc
aacaacccggcgttaatagaagttgcacctcgcaacacgaccgctgaaaagattgagcaa
accatttaccgagtagatcgtgataaaaaacgcgagttgttagcccacctaatccagcag
catggctggtttcaggtactcgttttcacgcgcactaaacatggtgcaaaccgcttagca
gagcagctttctaagcaagacattcccgctatggccatccatggcaataagagccaaggg
gctagaacacgtgcactaggcgcttttaaaagtggtgacttgcaggtccttgtcgccacc
gatattgccgcgcgtgggttagatattaacgaacttcctcatgtcgttaatttcgactta
cccaatgtggcagaggattatgttcaccgtattgggcgcaccggccgagcgggcagcaat
ggagaagctgtttcactcgtatgtgtcgacgaacacggcttgctgagtggaattgagcgc
ctaattaagcaaaatctgcctaaacgcatcgaacccggttttgaaccagaccccaacgcc
aagcccgagccgattgaaaatggccgccgtggtcagaagcagccccgcgccaagcgcaag
ccagaagggcaagcgaatacaggcggtgaacgtcggcgtcgcgcccgtcgctag
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