Vreelandella venusta: EI420_08825
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Entry
EI420_08825 CDS
T05892
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hvn
Vreelandella venusta
Brite
KEGG Orthology (KO) [BR:
hvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvn03019
]
EI420_08825 (hrpB)
Enzymes [BR:
hvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EI420_08825 (hrpB)
Messenger RNA biogenesis [BR:
hvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EI420_08825 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
Flavi_DEAD
nSTAND3
AAA_25
AAA_19
HA2_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZM95776
UniProt:
A0A3Q8WH91
LinkDB
All DBs
Position
1869120..1871576
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AA seq
818 aa
AA seq
DB search
MPLLAMSTLPIEQHLKPIQTALSEHNRLILVAQPGAGKTTRVPLTLLNSQWAQGQKILLL
EPRRVAARLAASFMAAQLNEPIGKTVGYRMRGDSKVSSDTRLEVLTQGVLTRMLQDDPLL
EGVAGIIFDEFHERSIEADLGLALSLDIQQSVRDDLRLVVMSATLDVAALTNVLGRDTCV
IESTGREFPIDTYHRPLGGDETLDAAAYRVVTEALANVDSRDVLVILPGVAEITRLVQML
ENSAFDVEVRALHGGMSIEAQQAALRLHETRQRVIVATAIAESSVTVDGVNVVIDAGLER
VPLFQPQTGLTRLTTRRVNRASADQRRGRAGRQQPGTCYRLWSQEQPMVAYGEPEIAQAD
LSRLALEVARWGARSPEELVWMTPPPNGAWQSSQALLRQLGILDTVGLLTPLGKQSARWP
LEPRLAVMLSKAASLNAVPLACALAALLEGRERVSGSLRDALAQRLGQSRRFPQWQRETQ
RLMDMASLKLPDKLPLEPLSCLLAIAYPDRVGQFISPGRFKLANGKTATLSASHLLANEA
FIVAVSVESASSEAAIYLAEPIMQTALIDLYPETQQWEERVTWSDAQGKLLGEAVQRHGE
LVLARRPLAELSREAVQQALLSALKQRPAALFNGKVKQLRGRMALVASLYSDVWPDWSES
ALLDSLDVWLAPYMTGITRFSQLEKMPFHSYLMATLSWDEQSHFERLTPPSIMAPSGNQA
SVDYEPCLTGRPPVLALKLQEAFGWQDTPTVADGHMPVVIHLLSPAKRPLQVTQDLRSFW
VNGYPEVRKEMRGRYPKHPWPEDPMTAQATASTKRHKV
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgcccctattggcgatgtctacgcttccaattgagcagcacctcaagccgattcagacg
gctctctctgaacataaccgacttatcttggtcgctcagccgggggcgggtaagacaacc
agagtcccgctgaccttgctaaacagtcaatgggcgcagggccagaagatactgttgcta
gagcctcgacgggtagctgctcgtttggcggcaagctttatggccgcgcagcttaatgag
cctatcggtaagacagttggctatcgtatgcgcggggacagtaaagtgagctcggatact
cgtttggaggtgctcactcagggcgtcctgacgcgtatgctgcaagatgatccgttgctc
gaaggagtcgccggtatcatcttcgatgagtttcatgagcgcagcatagaagcagatctt
gggctggcgctatcgctggacattcagcaaagcgttcgcgatgacttacgactggtggtg
atgtctgcgacgttagatgttgccgcgctaacaaacgtattgggtcgcgatacatgcgtg
attgaaagcacaggtcgcgaattcccaatcgacacatatcaccgccctttggggggcgat
gagacgctagatgccgctgcttaccgagtggtaaccgaggccttggcgaatgttgatagt
cgcgacgtgctggtgattttaccaggggtagcagagataacccggctagtacaaatgctg
gaaaatagtgcctttgatgttgaggtgcgcgcattgcatggcggcatgtccatcgaagcg
cagcaagctgcattgaggctacatgaaacacgccagcgagtgattgtcgcgacggccatt
gcggaatccagcgtgactgttgatggcgttaatgtggtcattgacgcgggcttggagcga
gtaccgttgtttcagccgcaaacagggcttactcgactaactacccggcgcgtcaatcgt
gccagcgctgatcaacgtcgcggacgtgcagggcggcaacagccgggcacgtgttatcgg
ttgtggtctcaagagcagccaatggttgcttacggtgaacccgagatagcccaagctgat
ttatcaaggctagcgctggaagtcgccagatggggagcacgttcgccagaagagttagtt
tggatgacgccaccgcctaacggtgcatggcaaagtagtcaggctttgctccgtcagctt
ggcattcttgatacagtgggattattaacacccttaggtaaacaaagtgcgcgctggccg
cttgagccacgtttagcggtcatgctgtcaaaagcagcgtcattgaatgcagtaccgctt
gcctgtgctttagcagctctgttagagggcagagagcgtgtcagtggctcgctaagagat
gcgctggctcagcggctcggccaatccaggcggtttcctcaatggcaacgagaaactcag
cgtcttatggatatggctagcctcaagctgccagataagctaccgcttgagccgcttagc
tgcctgctggcgatagcttacccggatcgtgttggtcaattcatcagtccaggtcggttc
aagcttgccaatggcaaaaccgccacgctctccgctagccacctcctggcgaatgaagca
tttatcgtcgccgttagcgtagagagtgccagtagtgaggcggcaatttacctggcagaa
ccgattatgcagacagcgcttattgacctttaccctgaaactcaacagtgggaggagcgt
gttacttggtcagatgcccaaggaaagcttcttggtgaagctgttcagcgccatggtgaa
cttgtattggcacgtcggcccttagcggagttatctagagaggccgtccagcaagcattg
ctgagtgcattgaaacaacgacctgcggcgctttttaatggcaaggttaagcagttacgg
gggcgaatggcgctagtggcgagcctttattctgacgtatggcctgactggtcagagagc
gcgctattggacagtttggatgtatggctggcaccttacatgacgggtataacacgcttc
agccagctagaaaaaatgccattccatagctacttaatggcaacgcttagttgggacgag
caaagccattttgaacgtttaacaccgccgtcaataatggctcctagtggtaatcaagca
tcggttgattatgagccttgcctaacaggaagaccgccagtgcttgctctgaagttacag
gaagcgtttggttggcaggatacccccaccgttgcggacggtcatatgcctgttgtcatt
catctgctttcaccagccaaaaggccgcttcaagtgactcaggatttacgtagtttttgg
gtgaatggctacccagaggtgcgtaaagagatgcgtggccgctatcctaaacacccctgg
ccagaagatccgatgaccgctcaagcaacggcatcgacaaaacgacataaagtttaa
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