Vreelandella venusta: EI420_11650
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Entry
EI420_11650 CDS
T05892
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hvn
Vreelandella venusta
Pathway
hvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI420_11650 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvn03019
]
EI420_11650 (rhlB)
Enzymes [BR:
hvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI420_11650 (rhlB)
Messenger RNA biogenesis [BR:
hvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI420_11650 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AZM96293
LinkDB
All DBs
Position
complement(2442041..2443315)
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AA seq
424 aa
AA seq
DB search
MSEPEQTTASAQNRKPKRRRRKPRRRQSNWDLRQFQVPAVAGKWRFHDFDLPLPLMRAIH
AQGFEYCTPIQSEALRHTLLGGDIVGKAQTGTGKTAAFLISVMAYFLEEPTPDGQKQGAP
RALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRDSLGKKIDILVATPGRL
LDFHQKRDIDLSEVEVLVLDEADRMLSMGFIPDVKRIIRYTPKKEQRQTFLFSATFTDDI
LNLASQWTLTPAHVEIEVTVENQADIDQRVYLVSDDDKQRLLVNLLTQESFERVMVFGNR
RDLVRKLDDLLKKAGVSVAMLSGDVPQNQRIKTLESFREGDIQVLVATDVAGRGIHIEDV
SHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIERYINGKLPCEHPP
EGML
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagccggaacagaccacagcatcggcccagaaccgcaagcctaaacgccgccgt
cggaagccgcgtcgtcgtcaatcaaactgggatcttcgtcagtttcaggtgcccgccgtt
gccggcaagtggcgctttcatgactttgatctgccgctgcctttgatgcgtgccattcat
gcccaggggtttgaatactgcacgcctattcagtcagaggcgctgcgacacacgctgctg
ggtggcgatattgtcggcaaggcgcagacaggcaccggaaaaaccgccgcctttttgatc
tcggtaatggcttattttctggaagagccgacccccgatggccaaaagcagggtgcaccc
cgtgcgttaattattgcgcctacccgggaattggcactgcaaattgaaaaagatgctaaa
gcgcttgctcgcttcacgcagctcaatgtggccagtgttgtcggcggcatggactatcaa
aagcagcgcgacagtttgggtaagaagatcgatattttggtggcaacaccaggtcgcttg
ctggacttccatcagaagcgtgatatcgacctttccgaagttgaagtgttggtattggat
gaagcggaccgtatgctttccatgggctttattcccgatgtgaagcgcatcatccgttat
acgcctaaaaaagagcagcgccagacgtttctgttctcggcaacctttaccgatgatatc
ttgaacctagcgagtcaatggacgctcactcctgcccatgtagagattgaagttaccgtt
gagaatcaggccgatatcgatcagcgcgtttatttagtatctgatgacgacaagcagcgg
ctgttggtgaacctgctgacacaggagagtttcgagcgcgtgatggtgtttggtaatcgc
cgtgatctcgtgcgcaagctagatgatttgctgaaaaaagcgggtgtcagtgtcgctatg
ctatcaggagacgtgccacaaaatcagcgcatcaaaactttggaaagcttccgtgaggga
gatatccaagtgctggtggcaactgatgtcgcaggacgtggtattcatattgaagatgtc
agccatgtgatcaactacacgctgccggaagatccggaagattacgttcaccgtattgga
cgtaccggacgtgcgggtgccaaaggcgtctcgattagttttgttggcgaagaagatgca
ttctcgctaccagagattgagcgctacattaacggtaagttgccctgcgaacatccgccg
gaaggcatgctgtaa
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