Haloferax volcanii DS2: HVO_0039
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Entry
HVO_0039 CDS
T01200
Symbol
rad3b
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hvo
Haloferax volcanii DS2
Pathway
hvo03022
Basal transcription factors
hvo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HVO_0039 (rad3b)
09124 Replication and repair
03420 Nucleotide excision repair
HVO_0039 (rad3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvo03021
]
HVO_0039 (rad3b)
03036 Chromosome and associated proteins [BR:
hvo03036
]
HVO_0039 (rad3b)
03400 DNA repair and recombination proteins [BR:
hvo03400
]
HVO_0039 (rad3b)
Enzymes [BR:
hvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HVO_0039 (rad3b)
Transcription machinery [BR:
hvo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HVO_0039 (rad3b)
Chromosome and associated proteins [BR:
hvo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HVO_0039 (rad3b)
DNA repair and recombination proteins [BR:
hvo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HVO_0039 (rad3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
nSTAND3
AAA_25
AAA_22
AAA_16
AAA_34
HBB
SecA_DEAD
T2SSE
PhoH
TrwB_AAD_bind
Sigma54_activat
AAA_7
Asparaginase_C
Motif
Other DBs
NCBI-ProteinID:
ADE05091
UniProt:
D4GYN4
LinkDB
All DBs
Position
complement(37234..39438)
Genome browser
AA seq
734 aa
AA seq
DB search
MAHANGAPDDGDADGAWRFFPYDEPYPNQEAAMSGIADALDDERNVLLEGATGTGKTISA
LVPALSYAREHDKTVVITTNVHQQMRQFVEDARAITREEAIRAVVFRGKSSMCHIDVGFQ
ECQTLRDTTRSIVEKESDKAELSEQTQSLLDGIREGESGAADARSAVTDELDAIDDELAE
LKEGNYCEHYYNNLTRNTDEFFQWLFDDVRTPDEIFEYAGKQNLCGYELLKEGMEGIDLV
VCNYHHLLDPMIREQFFRWLDRDPDDVITVFDEAHNIEGAARDHASRALTENTLESAMTE
LEDEDDSRAESARNVIGTFLDALRDSYESAFGFGEREQVGENWYDLSIASQGRRDDLTME
FLQSYEGRGIDVEVELALQLGKQLDEQYEDAYKNGEATTRKECQTLQAANFIADWTELGD
ELGRHPVLSVRRDGGTDEIYGRAELYTCIPREVTKELFEEVHASILMSATLRPFDVTEST
LGLDDPVTMAYGLEYPEENRRTFSVSLPALFSSERDDPGTQETVEEVLADAAGFTPGNTL
AFFPSYAEAERYHERLRANPNVDAELFLDEPGVRAEEMRREFVAEDGAVLLTSLWGTLAE
GVSFDGDDARTVVVVGVPYPHLSERLEAVQDAYDRVYRRKKDAGWRYAVEIPTIRKTRQA
LGRVIRAPDDFGVRVLADKRYTRESTSMGKYGVRGSFPVEERSEMVDIAPNKLKFAMLNF
YTDHDAYDGDPPRP
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
gtggcccacgccaacggcgcacccgacgacggcgacgcggacggagcgtggcggttcttc
ccgtacgacgagccgtacccgaatcaggaggcggcgatgtccggcatcgccgacgcgctc
gacgacgagcggaacgtcctcctcgaaggggcgaccgggaccgggaagaccatctccgcg
ctcgtgcccgcgctctcgtacgcccgcgagcacgacaagacggtcgtcatcacgacgaac
gtccaccagcagatgcgccagttcgtcgaggacgcccgcgccatcaccagagaggaggcc
atccgcgcggtggtgttccgcgggaagtcctcgatgtgccacatcgacgtgggttttcag
gagtgtcagaccctccgcgatacgacccggagcatcgtcgaaaaggagtccgacaaggcc
gaactctccgagcagacgcagtcgctcctcgacgggatccgagagggtgagtccggcgcg
gccgacgcgcgaagcgccgtcacggacgaactcgacgccatcgacgacgagttggcggag
ttgaaggagggcaactactgcgagcactactacaacaacctcacgcggaacacagacgag
ttcttccagtggctgttcgacgacgtgcggacgcccgatgagattttcgagtacgcgggc
aagcagaacctctgcggctacgaactgctcaaggagggcatggagggcatcgacctcgtc
gtctgcaactaccaccacctgctcgacccgatgatacgcgagcagttcttccggtggttg
gaccgcgaccccgacgacgtgattacggtgttcgacgaggcgcacaacatcgagggcgcg
gcccgcgaccacgcgagtcgcgcgctcaccgagaacacgctcgaaagcgcgatgaccgag
ttggaagacgaagacgactcgcgggccgagagcgcccgcaacgtcatcggaacgttcctc
gacgcgctgcgcgacagctacgaatcggcgttcggcttcggcgagcgcgagcaggtcggt
gagaactggtacgacctctctatcgccagtcagggtcgtcgcgacgacctgacgatggag
ttcctacaatcctacgagggccgcggcatcgacgtggaggtcgaactcgcgctccagttg
ggcaagcagttagacgagcagtacgaagacgcgtacaagaacggcgaggcgacgacgcgc
aaggagtgccagacgctccaggcggcgaacttcatcgccgactggacggagctgggcgac
gaactcggccgccacccggtgctgtcggtccgccgcgacggcggcaccgacgagatttac
ggccgcgcggaactgtacacctgtatcccgcgggaggtcacgaaggagctgttcgaggag
gttcacgcgagcatcctgatgtcggcgacgctccgcccgttcgacgtgacggaaagcacg
ctcggcctcgacgacccggtgacgatggcctacggcctcgaataccccgaggagaaccgc
cggacgttttcggtctcgctgcccgcgctgttctcctccgagcgcgacgaccccggcaca
caggagacggtcgaggaggtgctcgcggacgccgccggcttcacgccggggaacacgctc
gcgttcttcccgtcgtacgccgaggccgagcgctaccacgagcgcctgcgggcgaacccg
aacgtcgacgcggagctgtttttagacgaaccgggcgtccgcgccgaggagatgcgccgg
gagttcgtcgccgaggacggcgcggtgcttctcacctcgctgtgggggacgctcgcggag
ggggtgagcttcgacggcgacgacgcccgaacggtcgtggtcgtcggcgtaccctacccg
catctctccgagcgattggaggcggtacaggacgcctacgaccgcgtctaccgtcggaaa
aaggacgccggctggcgctacgccgtcgagattccgacgattcgaaagacccgacaggcg
ctcggccgggtcatccgcgcgcccgacgacttcggtgtccgcgtgctggccgacaagcgg
tacacccgcgagagcacctcgatggggaagtacggcgtccgcgggtcgttcccggtcgag
gaacgctccgagatggtcgatatcgcgccgaacaaactcaagttcgcgatgctgaacttc
tacaccgaccacgacgcctacgacggcgacccgccgcggccctga
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