Haloferax volcanii DS2: HVO_0114
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Entry
HVO_0114 CDS
T01200
Symbol
ligT
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hvo
Haloferax volcanii DS2
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hvo03016
]
HVO_0114 (ligT)
Enzymes [BR:
hvo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HVO_0114 (ligT)
Transfer RNA biogenesis [BR:
hvo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HVO_0114 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ADE05007
UniProt:
D4GYW0
LinkDB
All DBs
Position
110198..110752
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AA seq
184 aa
AA seq
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MRCFLAVDLPDSLAAGVAAVQDRLSDADGLRFTDPESAHVTLKFLGEVSPDRVGAVEDAV
ESAVEAAGVGPFDASVGGLGVFPSLDYIRVVWVGVDDGAAELTRLHEAIERETTALGFDP
EDHEFTPHVTLARMDDARGKVLVRRVVGGESPTVGSFRVREVRLKKSDLGPDGPEYETVA
RVSL
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgctttctcgccgtcgacctccccgactcgctcgcggcgggcgtcgccgcggta
caagaccggctctcggacgcggacgggcttcggttcaccgaccccgagagtgcgcacgtc
accctgaagttcctcggcgaggtgtcgccggaccgcgtcggagcggtggaggatgcggtc
gaatcagccgtcgaagccgcgggcgtcggccccttcgacgcctcggtcggcggactcggc
gtcttcccctcgctggactacattcgagtcgtttgggtcggcgtcgacgacggcgcggcc
gagttgacgcggctccacgaggccatcgagcgcgagacgacggcactcggcttcgacccc
gaagaccacgagttcacgccgcacgtcacgctcgcccgcatggacgacgcccgcgggaag
gtcctcgtgcggcgcgtcgtcgggggcgagtcaccgacggtcgggtcgtttcgcgtgcgc
gaggtacgcctgaagaagagcgacctcggccccgacggccccgagtacgagacggtggcg
cgggtctcgctgtga
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