Haloferax volcanii DS2: HVO_0388
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Entry
HVO_0388 CDS
T01200
Symbol
vacB
Name
(GenBank) homolog to ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hvo
Haloferax volcanii DS2
Pathway
hvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HVO_0388 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvo03019
]
HVO_0388 (vacB)
03016 Transfer RNA biogenesis [BR:
hvo03016
]
HVO_0388 (vacB)
Enzymes [BR:
hvo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HVO_0388 (vacB)
Messenger RNA biogenesis [BR:
hvo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HVO_0388 (vacB)
Transfer RNA biogenesis [BR:
hvo03016
]
Prokaryotic type
tRNA degradation factors
HVO_0388 (vacB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF982
Motif
Other DBs
NCBI-ProteinID:
ADE04214
UniProt:
D4H014
LinkDB
All DBs
Position
complement(343699..345018)
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AA seq
439 aa
AA seq
DB search
MSDDAQAYAGTAEGQGPVEIDAELARHLQNKREELFEEFEIRDAFPPEVLSEARARTDGV
HEEIEDELEHRKDLRDLTTWTTDPVDAQDFDDALSIRENEETYTLWVHIADVTHYVHPGS
EMWAEAVKRGNTVYLPAYTIHMLPPALAETVCSLVPEEDRLAHTVEMEIKKDTLSFESID
IYKSVIHSNERLTYTQCENRLEDPDLPLHEENALVFDLADQLHEQRKEDGSLVLNPSRDR
AHTIIEECMLKANKAVTHELMWNRGVEAMYRVHPQPTPDQWDKALREITELDGVSIQSTS
WDEPRKAVNDALESANSRTLNKIQRAVLKVMPRAKYMNDPFGGHYALNFDIYGHFTSPIR
RLSDLINHWIVHENDVPEDLVELCDRASDRQKDAETAERLYKQFLQEVGLDPYAVNNRGI
VTVDDDGEVIDENGLPPQE
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgcgcaggcgtacgccgggaccgccgaagggcaaggaccggtggagata
gacgccgaactcgcgcgacacctccagaacaagcgcgaggaactgttcgaggagttcgag
attcgtgacgcgttcccgccggaagtcctctcggaggcgcgtgcgcgcaccgacggcgtc
cacgaggagatcgaagacgaactcgaacaccgcaaagacctccgcgacctcacgacgtgg
acgaccgaccccgtcgacgcccaggacttcgacgacgccctgagcatccgcgagaacgag
gagacgtacacgctgtgggtccacatcgccgacgtgacccactacgtccaccccggctcg
gagatgtgggccgaggccgtcaagcgcggcaacaccgtctacctccccgcctacaccatc
cacatgctcccgccggcgctggccgagacggtctgttctctcgtccccgaggaggaccgc
ctcgcccacaccgtcgagatggaaatcaagaaggacacgctctcgttcgagtctatcgac
atctacaagtccgtcatccactccaacgaacggctcacctacacgcagtgtgaaaaccgg
ctggaagaccccgacctccccctccacgaggagaacgcgctggtcttcgacctcgcggac
caactccacgaacagcgcaaggaagacggctcgctcgtcctcaacccgagccgcgaccgc
gcccacaccatcatcgaggagtgcatgctgaaggcgaacaaggccgtcacgcacgaactc
atgtggaaccgcggcgtcgaggcgatgtaccgcgtccacccgcagccgactcccgaccag
tgggacaaggcgctccgcgaaatcaccgaactcgacggcgtgagcatccagtctacgtcg
tgggacgagccccgaaaggccgtcaacgacgccttggagagcgcgaactcccgcacgctc
aacaagattcagcgcgccgtgctgaaggtcatgccccgcgcgaagtacatgaacgacccc
ttcggcggccactacgcgctcaacttcgacatctacggccacttcacctcgccaatccgc
cggctgtcggacctcatcaaccactggatcgtccacgaaaacgacgtacccgaagacctc
gtcgaactctgcgaccgcgcctcggaccgccagaaagacgccgagacggccgagcgactc
tacaagcagttcctccaagaggtcggcttggacccctacgcggtcaacaaccgcggcatc
gtcaccgtcgacgacgacggcgaggtcatcgacgaaaacggcctcccgccgcaggaataa
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