Haloferax volcanii DS2: HVO_1723
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Entry
HVO_1723 CDS
T01200
Symbol
rad25d
Name
(GenBank) DNA repair helicase Rad25
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hvo
Haloferax volcanii DS2
Pathway
hvo03022
Basal transcription factors
hvo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HVO_1723 (rad25d)
09124 Replication and repair
03420 Nucleotide excision repair
HVO_1723 (rad25d)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvo03021
]
HVO_1723 (rad25d)
03400 DNA repair and recombination proteins [BR:
hvo03400
]
HVO_1723 (rad25d)
Enzymes [BR:
hvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HVO_1723 (rad25d)
Transcription machinery [BR:
hvo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HVO_1723 (rad25d)
DNA repair and recombination proteins [BR:
hvo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HVO_1723 (rad25d)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
SNF2-rel_dom
Helicase_C
DEAD
AAA_30
AAA_22
MarR_2
SLFN-g3_helicase
Flavi_DEAD
TrmB
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ADE02706
UniProt:
D4H067
LinkDB
All DBs
Position
complement(1590526..1592613)
Genome browser
AA seq
695 aa
AA seq
DB search
MTAEDEDQSPPDGDGDIDGAGASRDVLDRLADVTEVSDVPDASTVDADQPSEIADGVSLA
AFYEALESEGRPVVTAQQVARRLGVSQADAMDGLDALAGAGRVQRVNVETDPVVWYPTEW
GDLASRERVVLFPKRREIVVDNPTQYTRARLSQFAHLADTTGDREGRGRGYLYRIRQEDV
WQAPFDDVDSLLSMLRSVLPERSPHLEAWVEDQWKRAHQFRLYSHEEGYTVLEAATESLM
GNVALQKLDDDHVYAPISDTEAWVRDEEIAAIKRILYDAGYPVEDDRDLEEGEELDVTLG
VDLRDYQRDWVDRFVDQRAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWRE
ELRSTTDLDADQIGEYHGGAKEIRPVTIATYQTAGMDRHRSLFDSRRWGLIIYDEAHHIP
SRVFQRSADLQSKHRLGLSATPIREDDKEAEIFTLIGPPIGTDWGKLFDAGYVQEPEVEI
RYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHADSKTLVFVDYLDQGEA
IAEALDVPFVSGETRHHRREAYFEAFRDGDLDTLVISRIGDEGIDLPNAGLAIVASGLGG
SRRQGSQRAGRTMRPTGSALVYVLATRGTSEEDFAQRQMQHLAGKGIRVRETSADDLDPE
SDGGDTDADTDTEDDESDGAESASADGAESATTDE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgaggacgaggaccaaagtcctcccgacggagacggcgacatcgacggggcc
ggcgcgtcccgagacgtgctcgaccgattggccgacgtaaccgaggtatccgacgtgccc
gacgcgtccaccgtcgacgcggaccaaccgagcgaaattgccgacggcgtctcgctcgca
gcgttctacgaagcgctcgaatccgagggccggcccgtggtgaccgcccagcaggtcgct
cgccgcctcggcgtctcgcaggcggacgcgatggacggactcgacgcgctcgccggtgcg
gggcgagtccagcgggtgaacgtcgagaccgacccggtcgtctggtatccgaccgagtgg
ggcgacctcgcctcgcgcgagcgggtcgtcctctttccgaaacgccgcgaaatcgtcgtc
gacaacccgacccagtacacccgggcgcgactctcgcagtttgcgcacctcgcggacacc
accggcgaccgcgagggccgcggccgcggttacctctaccgcattcggcaggaagacgtg
tggcaggcacccttcgacgacgtcgactcgctcctctcgatgcttcggtcggtcctcccc
gagcggtcgccgcacctcgaagcgtgggtcgaagaccagtggaagcgcgcccaccagttc
cgcctctactctcacgaggagggatacaccgtcctcgaagccgccaccgagagcctcatg
ggcaacgtcgcgctccagaaactcgacgacgaccacgtctacgcccccatctccgacacc
gaggcgtgggtcagagacgaagaaatcgcggccataaagcgcatcctctacgacgcgggc
taccccgtcgaggacgaccgcgacctcgaagagggcgaggaactcgacgttacgctcggc
gtcgacctccgcgactaccagcgagactgggtcgaccgattcgtcgaccagcgcgccggc
gtcctcgtcgggccgcccggcgcggggaagaccatcgccggcatcggcgcgctcgccgcg
gtcggtggcgagacgctgattctcgtgccgagtcgcgaactcgcccgccagtggcgcgag
gaactccgctcgacgacggacctcgacgccgaccaaatcggcgagtatcacggcggcgcg
aaagagattcgcccggtcacaatcgccacctaccagaccgccgggatggaccgccatcgc
tcgcttttcgactcgcggcgttgggggctcatcatctacgacgaggcccaccacatcccg
agtcgcgtcttccagcggagcgccgacctccagtccaaacaccgcctcgggctgtcggcg
acgcccatccgcgaggacgacaaggaagcagagatcttcacgctcatcggcccgcctatc
ggcaccgactgggggaagctcttcgacgccggctacgttcaggagcccgaagtcgagatt
cgctacgtgggttggggcgacgacatggccagaaacgaatgggcctccagcgacggccgc
gagcggcacatgctcgccgcgatgaaccccgggaagatattcgagattcgtcggctccgc
gcccgtcacgccgactcgaagacgctcgttttcgtcgactacctcgaccagggagaggcg
attgccgaggcgctcgacgtgccgttcgtcagcggcgagacccgccatcaccgccgcgag
gcgtacttcgaggcgttccgcgacggcgacctcgacacgctcgtcatctcccgcatcggc
gacgagggcatcgacctcccgaacgccggactcgcaatcgtcgcctccggcctcggcggc
tctcgccggcagggctcccagcgcgccggccgaaccatgcgcccgacggggagcgcgctc
gtctacgtgctcgccacccgcggcacgagcgaagaggacttcgcccagcgccagatgcaa
cacctcgccgggaagggtatccgcgtccgggagacgagcgccgacgacctcgaccccgag
tcggacggcggtgacaccgacgccgacactgacaccgaagacgacgagtcggacggtgct
gagtcggcgtctgcggacggcgctgagtcagcgacgaccgacgagtaa
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