Haloferax volcanii DS2: HVO_2380
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Entry
HVO_2380 CDS
T01200
Symbol
cdc48a
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hvo
Haloferax volcanii DS2
Pathway
hvo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HVO_2380 (cdc48a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvo03019
]
HVO_2380 (cdc48a)
03009 Ribosome biogenesis [BR:
hvo03009
]
HVO_2380 (cdc48a)
04131 Membrane trafficking [BR:
hvo04131
]
HVO_2380 (cdc48a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hvo04147
]
HVO_2380 (cdc48a)
Messenger RNA biogenesis [BR:
hvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HVO_2380 (cdc48a)
Ribosome biogenesis [BR:
hvo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HVO_2380 (cdc48a)
Membrane trafficking [BR:
hvo04131
]
SNARE
SNARE associated proteins
Others
HVO_2380 (cdc48a)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HVO_2380 (cdc48a)
Exosome [BR:
hvo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HVO_2380 (cdc48a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
CDC48_2
AAA_5
RuvB_N
TIP49
AAA_22
AAA_33
nSTAND3
AAA_2
AAA_14
NPHP3_N
IstB_IS21
AAA_28
RNA_helicase
AAA_7
Sigma54_activat
Mg_chelatase
AAA_18
ABC_tran
AAA_17
DUF815
AAA_lid_PRS2_C
ATPase
AAA_3
NB-ARC
Zeta_toxin
Parvo_NS1
SLFN-g3_helicase
AAA_11
AAA_24
PhoH
TsaE
AAA_30
AAA_19
bpMoxR
NACHT
Vps4_C
Zot
DUF6985
Motif
Other DBs
NCBI-ProteinID:
ADE03529
UniProt:
D4GWM8
LinkDB
All DBs
Position
complement(2245008..2247239)
Genome browser
AA seq
743 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGKTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEATKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETKPEGVVLVTEDTDVELREEPISGFE
KAGGGITYEDIGGLTNEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
RAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEE
GRKEILQIHTRGMPLSDDVDLDDLADDTHGFVGADIEALTKEAAMKALRRYLPEIDLDRE
DIPPSLIDRMVVKNDDFGGALGEVEPSAMREVLVEIPKVTWNDVGGLEGPKQKVQESVEW
PLTTPEKFQRMGIEAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDALAPARGNDMGNNVSERVVNQLLTELDGLEDAGNV
MVIAATNRPDMIDPALIRSGRFDRLVLIGQPEEEGREQILDIHTQQSPLAPDVSLREIAE
ITDGYVGSDLESICREAAIEALREDSDAEEIEMRHFRKAMESVRPTITEELMRYYEDIQD
QFKGGSREGLSPDTRDGGRIGFQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactcgaagtggcgaaagcgtacccgaacgactcggggcgcggtatc
gcccgtcttgatccggacaccttgctccatctcaagctctcgccgggagacatcatcgag
atcgagggaggaaaaacgaccgccgcgaaggtgtggcgggcagaccggcaggactggaac
acggatacggtccgcatcgacgggttcacgcggcagaacgccgacgtgggcatcggtgaa
cgggtcactatccgcaaagcagaggctacgaaggccgacaaactcgtgctcgcgccgccg
gaggaggcgagcgtgcagttcgggtccgacgcggccggcatggtcaaacggcagattctc
aagcgacccgtggtcgaacgtgacatcgtcccggtgatgtcgagtacgaaccatccgttt
atgcggtcgcccggacaggcgattccgctcatcgccgtcgagacgaaacccgagggcgtc
gtcctcgtcaccgaggacactgatgtcgaactccgcgaggagcccatctccggcttcgag
aaggccggcggcggcatcacctacgaagacatcggcgggctgaccaacgagattcagcgc
gtccgcgagatggtcgaactgccgatgaagcacccccagatattcaagaaactgggcatc
gagcccccgcagggggtgttgctccacggcccgccgggcaccgggaagacgcttctcgcc
cgcgcggtcgccaacgagacttcggcgagtttcttctctatcgcggggccggagatcatc
tcgaagtactacggcgagtcagaacagcagctccgcgagatattcgaggacgccaaagag
gagtcgccgagcatcatcttcatcgacgagctcgattccatcgcgcccaagcgcgaggac
gtgaccggcgaggtcgaacgccgggtcgtcgcccagctgctgacgatgatggacgggctc
gaagcccgcggacaggtcatcgtcatcgcggcgacgaaccgcgtcgactcggtcgacccc
gcgctccgacgccccggtcgcttcgaccgcgaaatcgaaatcggcgttccggacgaggag
ggtcgcaaggaaatcctccagattcacacccgcgggatgccgctttcggacgacgtggac
ctcgacgacctcgccgacgacacccacggcttcgtcggcgcggacatcgaggcgctgacc
aaggaggccgcgatgaaggcgctgcggcgctacctccccgaaatcgacctcgacagggag
gacatccccccgagtctcatcgaccgcatggtcgtcaagaacgacgacttcggcggcgcg
ctcggcgaggtcgaaccctcggcgatgcgcgaggtgctcgtcgagattccgaaggtgacg
tggaacgacgtgggcgggctcgaagggcccaaacagaaggtccaagagagcgtcgagtgg
ccgctgacgacccccgagaagttccagcggatgggtatcgaggctccgaaaggcgtgctc
ctctacgggccgcccggcacgggcaagaccctgatagcgaaggccgtcgccaacgagacg
aacgcgaacttcatctcggtgcgcggcccgcagctgctgtcgaagtgggtcggtgagtcg
gagaaggcgattcggcagacgttccgcaaggcgcggcaggtctccccgaccatcatcttc
ttcgacgagctcgacgcgctcgccccggcccgcggcaacgacatgggcaacaacgtctcc
gagcgcgtcgtcaaccagctcctgacggagttagacggcctcgaagacgcgggcaacgtc
atggtcatcgcggcgaccaaccgcccggacatgatcgaccccgcgctcatccgctcgggc
cggttcgaccgcctcgtgctcatcggccagcccgaagaggagggccgcgagcagattctc
gacatccacacgcagcagagtccgctcgcgccggacgtgagcctccgcgaaatcgcggag
ataaccgacggctacgtgggctccgacctcgaatccatctgccgcgaggcggccatcgag
gcgctccgcgaggactccgacgccgaagagatagagatgcgccacttccgcaaggcgatg
gagtcggtccgcccgaccatcaccgaggaactgatgcgctactacgaggacatccaagac
cagttcaaaggcggctcccgcgagggcctgtcgcccgacacccgcgacggcggccgcatc
ggcttccagtaa
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integrated database retrieval system
