Haloferax volcanii DS2: HVO_2700
Help
Entry
HVO_2700 CDS
T01200
Symbol
cdc48b
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hvo
Haloferax volcanii DS2
Pathway
hvo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HVO_2700 (cdc48b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvo03019
]
HVO_2700 (cdc48b)
03009 Ribosome biogenesis [BR:
hvo03009
]
HVO_2700 (cdc48b)
04131 Membrane trafficking [BR:
hvo04131
]
HVO_2700 (cdc48b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hvo04147
]
HVO_2700 (cdc48b)
Messenger RNA biogenesis [BR:
hvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HVO_2700 (cdc48b)
Ribosome biogenesis [BR:
hvo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HVO_2700 (cdc48b)
Membrane trafficking [BR:
hvo04131
]
SNARE
SNARE associated proteins
Others
HVO_2700 (cdc48b)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HVO_2700 (cdc48b)
Exosome [BR:
hvo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HVO_2700 (cdc48b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
TIP49
AAA_14
AAA_22
AAA_33
NPHP3_N
nSTAND3
RNA_helicase
AAA_7
AAA_28
IstB_IS21
Mg_chelatase
AAA_3
NB-ARC
AAA_lid_PRS2_C
DUF815
ABC_tran
SLFN-g3_helicase
Sigma54_activat
Parvo_NS1
AAA_24
AAA_30
Zeta_toxin
AAA_17
AAA_18
TsaE
PhoH
AAA_11
AAA_19
Bac_DnaA
bpMoxR
ATPase_2
ATP-synt_ab
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
ADE03396
UniProt:
D4GVS7
LinkDB
All DBs
Position
complement(2546945..2549209)
Genome browser
AA seq
754 aa
AA seq
DB search
MKLIVKPLKQKDAGRGLAAIDRAAAAELDLEGGDFIRIDGPNDGTAIARVWPGYPEDQGT
GIIRIDGRLRQQAGVGIDERVDVEKADVTPAKRVTIALPQNLRIGGNIGTYIRDKLSGQP
VAQGQSVQLPLGFGFMSASNQSVPIKIASTDPDGTVVVTDNTEFQVSQKPAEQISDASPG
DDGGPSVTYEDIGGLDKELEQVREMIELPMRHPELFKRLGIEPPKGVLLHGPPGTGKTLI
AKAVANEIDASFHTISGPEIMSKYYGESEEQLREIFEEATENSPAIVFIDEIDSIAPKRS
EAGGDVERRVVAQLLSLMDGLDERGEVVVIGATNRVDAIDNALRRGGRFDREIEIGVPDR
DGRKEIMQVHTRNMPLTDDVDLDAYADSTHGFVGADLESLAKESAMHALRRIRPQLDLDA
EEIDAEVLEGLKVTEDDFKQALKSIEPSALREVFVEVPDVTWEDVGGLEPTKERLRETIQ
WPLEYPEVFQQMDMDAAKGVLMYGPPGTGKTLLAKAVANEAESNFISIKGPELLNKFVGE
SEKGVREVFKKARENAPTVVFFDEIDSIATERGRDSSSSGVTERVVSQLLTELDGLEALE
DVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEDARRAILDVHTREKPLADDVNLDKI
ASKTDGYVGADLEALAREASMNASREFIRSVQKEEIGESVGNVRVTMDHFEDALDEIGAS
VTDDVRRRYEEIEERFQKSEVERDRETEVGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcatcgtcaaacccctcaaacagaaggacgccggccgcgggctcgccgccatc
gaccgagccgcggccgcggaactcgacctcgaaggcggggatttcatccgcatcgacggt
ccgaacgacgggaccgccatcgcccgcgtctggcccggctaccccgaagaccaggggacg
ggcatcatccgcatcgacggccgcctccgccagcaggccggtgtcggcatcgacgagcgc
gtcgacgtggagaaagccgacgtgacgcccgcaaagcgcgtcaccatcgcgctcccgcag
aacctccgcatcggcggcaacatcgggacgtacatccgcgacaagctctcgggccagccg
gtcgcacagggtcagagcgtccagcttccgctcggcttcggcttcatgagcgcgtcgaac
cagtcggtccccatcaaaatcgcgtcgacggaccccgacgggaccgtcgtcgtcaccgac
aacaccgagttccaggtgagccagaagcccgccgagcagatttcggatgcttcgccgggt
gacgacggtggcccctccgtcacctacgaggacatcggcggcctcgacaaggagctcgaa
caggtccgggagatgattgaactcccgatgcgccaccccgaactgttcaagcgcctcggc
atcgagccgccgaaaggcgtgctcctccacggcccgccggggacgggcaagaccctcatc
gcgaaggccgtcgccaacgaaatcgacgcctcgttccacaccatctccggcccggagatt
atgtcgaagtactacggggagtccgaagaacagctccgcgaaatcttcgaggaggcgacg
gagaactcgcccgccatcgtcttcatcgacgagatagactccatcgcgcccaagcgcagc
gaggccggcggtgacgtggaacgccgcgtcgtcgcccaactgctgtcgctcatggacggt
ctcgacgagcgcggcgaggtcgtcgtcatcggcgcgaccaaccgcgtggacgccatcgac
aacgcgctgcgccgcggcggccgcttcgaccgcgaaatcgaaatcggcgtgccggaccgc
gacggccgcaaggaaatcatgcaggtccacacgcggaacatgccgctgaccgacgacgtg
gacctcgacgcctacgccgacagcacccacggcttcgtcggggccgacctcgaatcgctg
gccaaggagtcggcgatgcacgccctgcggcgcatccgcccgcagctcgatctcgacgcc
gaggagatagacgccgaagtgctcgaaggcctcaaagtcacggaagacgacttcaagcag
gcgctcaagagcatcgaaccctcggcgctccgcgaggtgttcgtcgaggtccccgacgtg
acgtgggaggacgtgggcggactcgaacccaccaaagagcgcctccgcgaaaccatccag
tggcccctcgaataccccgaggtgttccagcagatggacatggacgccgccaagggcgtc
ctaatgtacggcccgccgggcacggggaagaccctgctggcgaaggccgtcgccaacgag
gcggagtcgaacttcatctccatcaagggccccgaactcctgaacaagttcgtcggcgag
tccgaaaagggcgtccgcgaggtgttcaagaaggcccgcgagaacgccccgacggtggtg
ttcttcgacgaaatcgactccatcgcgaccgagcgcggccgcgattcgtcgagttcgggc
gtcaccgagcgcgtcgtctcccaactgctcaccgaactcgacggtctcgaagcgctcgaa
gacgtggtcgtcatcgcgacgaccaaccggccggacctcatcgactcggcgctcctgcgc
cccggtcgcctcgaccgccacgtccacgtgcccgtgcccgacgaggacgcccgccgcgcc
atcctcgacgtgcacacccgcgaaaagccgctcgcggacgacgtgaacctcgataaaatc
gcgtcgaagaccgacggctacgtcggtgccgacctcgaagcgctcgcccgcgaggcgtcg
atgaacgcctcccgcgagttcatccggagcgtccaaaaagaggaaatcggcgagagcgtc
ggcaacgtccgcgtgacgatggatcacttcgaggacgccctcgacgaaatcggcgcgagc
gtcaccgacgacgtgcgccgccgctacgaggaaatcgaagagcgcttccagaagagcgag
gtcgaacgcgaccgcgagacggaagtcggtcgcaccttccagtaa
DBGET
integrated database retrieval system
